Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009374 |
| length | 2012 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 14 |
| gene id | XLOC_004732 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 25223799 ~ 25284510 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0016575 | histone deacetylation | biological_process |
| GO:0016581 | NuRD complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0042826 | histone deacetylase binding | molecular_function |
| GO:0003714 | transcription corepressor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0001103 | RNA polymerase II repressing transcription factor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6485 | Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Is expressed in blastodisc; central nervous system; and intermediate cell mass of mesoderm. Orthologous to human MTA3 (metastasis associated 1 family member 3). |
| ensembl_id | ENSDART00000127454 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009371 | lncRNA | upstream | 9146 | 25201543 ~ 25214727 (+) | False | XLOC_004731 |
| TCONS_00010936 | lncRNA | upstream | 9146 | 25205531 ~ 25214727 (+) | False | XLOC_004731 |
| TCONS_00010937 | lncRNA | upstream | 9146 | 25210011 ~ 25214727 (+) | True | XLOC_004731 |
| TCONS_00009368 | lncRNA | upstream | 148753 | 25073305 ~ 25075120 (+) | False | XLOC_004728 |
| TCONS_00009376 | lncRNA | downstream | 44887 | 25312018 ~ 25420721 (+) | False | XLOC_004733 |
| TCONS_00010938 | lncRNA | downstream | 112958 | 25380089 ~ 25430371 (+) | False | XLOC_004733 |
| TCONS_00010740 | lncRNA | downstream | 113006 | 25380137 ~ 25387670 (+) | False | XLOC_004733 |
| TCONS_00010939 | lncRNA | downstream | 113037 | 25380168 ~ 25408520 (+) | False | XLOC_004733 |
| TCONS_00010741 | lncRNA | downstream | 115146 | 25382277 ~ 25389591 (+) | True | XLOC_004733 |
| TCONS_00009370 | mRNA | upstream | 112899 | 25097754 ~ 25110974 (+) | True | XLOC_004730 |
| TCONS_00009369 | mRNA | upstream | 131303 | 25085751 ~ 25092570 (+) | True | XLOC_004729 |
| TCONS_00009367 | mRNA | upstream | 265081 | 24952902 ~ 24958792 (+) | False | XLOC_004727 |
| TCONS_00009366 | mRNA | upstream | 265081 | 24952902 ~ 24958792 (+) | True | XLOC_004727 |
| TCONS_00009365 | mRNA | upstream | 453683 | 24738962 ~ 24770190 (+) | True | XLOC_004725 |
| TCONS_00009378 | mRNA | downstream | 165496 | 25432627 ~ 25485309 (+) | False | XLOC_004734 |
| TCONS_00009379 | mRNA | downstream | 200429 | 25467560 ~ 25487244 (+) | False | XLOC_004734 |
| TCONS_00009381 | mRNA | downstream | 333554 | 25600685 ~ 25603341 (+) | True | XLOC_004736 |
| TCONS_00009382 | mRNA | downstream | 373349 | 25640480 ~ 25770232 (+) | True | XLOC_004737 |
| TCONS_00009384 | mRNA | downstream | 508603 | 25775734 ~ 25830268 (+) | False | XLOC_004739 |
| TCONS_00009364 | other | upstream | 658281 | 24565478 ~ 24565592 (+) | True | XLOC_004724 |
| TCONS_00009361 | other | upstream | 805533 | 24418224 ~ 24418340 (+) | True | XLOC_004723 |
| TCONS_00009355 | other | upstream | 878380 | 24342331 ~ 24345493 (+) | False | XLOC_004722 |
| TCONS_00009353 | other | upstream | 1009356 | 24214401 ~ 24214517 (+) | True | XLOC_004721 |
| TCONS_00009349 | other | upstream | 1291858 | 23923325 ~ 23932015 (+) | True | XLOC_004717 |
| TCONS_00009380 | other | downstream | 201181 | 25468312 ~ 25477906 (+) | True | XLOC_004734 |
| TCONS_00009383 | other | downstream | 380996 | 25648127 ~ 25648243 (+) | True | XLOC_004738 |
| TCONS_00009419 | other | downstream | 1867738 | 27134869 ~ 27134967 (+) | True | XLOC_004762 |
| TCONS_00009421 | other | downstream | 1889812 | 27156943 ~ 27163064 (+) | False | XLOC_004764 |
| TCONS_00009426 | other | downstream | 1951862 | 27218993 ~ 27220589 (+) | True | XLOC_004765 |
