RNA id: TU117306


Basic Information

Item Value
RNA id TU117306
length 778
lncRNA type sense_over
GC content 0.54
exon number 2
gene id AMCG00017902
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27838251 ~ 27839790 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGAAAGCACGAAAGAGGGCGGGACCGTCCTATTGCGCGACACGTCATTGGTTCTCCTCCCAACCGACACTTCCCAGAAACCCGGAAGTCGGCACCCTGGGCTCAGCAATGGCGTCTGAGAAGGAGCCGCCGAGAGGAGCGCTGCAGTCGCTGCCGAAACACTCGTACTGGTACGATTTCTGGCTCTTCATCCTGTTCGACATCGTGCTTTTCCTGGTGGTGTATTTGTTAGTCCCGTAAGGAGCCGACACGCTGCCCCGGCGCCTCCTGCGCTCCTCATGGCTTCTCCGAGACCCAAGTCTGGACTCCCCACTACAGCCTCGCCTTCTCTGATGATCACAGCCGGAGGAGCCCCAGGGGACTGGAGAAACGCCAAGCCACCTTCCTCATGATTGCTAACAGTTCAGTTAGACTTCCCTGAGAGACGTGTGATCCAGTGCCTGTGGCATTGAGGACCGAGCTGATGAGAGGGTTTATGGTTGAAGCGCAGTGTGCAGCGAGTTTTTAAGTGATTTAACGTGTGGGTGTGGAGTGAGAAGACTCCACAGTGGAAGAAGTGCATTCATCCCATAGTACATGTTCTTAAAATGCTCGGTTTATGTCCGGACTCGCTGACCGGCCCTTACCTTCGTCGCAGTTTATGGGGAATCGGTTTACAGTGTTGTTTGCCCTCCACTCCATGAAGCCCCGTCTCCTGGCCCACGCTGGCCACTGATGGATGTAACCCTCTTCTCTTCCGTGCTGCTTgtctattaaatatttactataagtgaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117276 lncRNA downstream 54201 27779037 ~ 27784050 (-) True G94012
TU117271 lncRNA downstream 70920 27762686 ~ 27767331 (-) True G94008
TU117088 lncRNA downstream 1339074 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 1484527 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 1579884 26258096 ~ 26258367 (-) True G93802
TU117336 lncRNA upstream 253678 28093468 ~ 28097158 (-) True G94060
TU117353 lncRNA upstream 580126 28419916 ~ 28420262 (-) True G94073
TU117354 lncRNA upstream 585242 28425032 ~ 28425243 (-) True G94074
TU117425 lncRNA upstream 894034 28733824 ~ 28735744 (-) True G94137
TU117522 lncRNA upstream 1367680 29207470 ~ 29207804 (-) True G94218
AMCG00017899 mRNA downstream 114520 27698901 ~ 27723731 (-) True AMCG00017899
AMCG00017895 mRNA downstream 405675 27427479 ~ 27432576 (-) True AMCG00017895
AMCG00017893 mRNA downstream 412019 27415574 ~ 27426232 (-) True AMCG00017893
AMCG00017894 mRNA downstream 429694 27400504 ~ 27408557 (-) True AMCG00017894
AMCG00017896 mRNA downstream 442591 27368219 ~ 27395660 (-) True AMCG00017896
AMCG00017903 mRNA upstream 2422 27842212 ~ 27844771 (-) True AMCG00017903
AMCG00017906 mRNA upstream 259115 28098905 ~ 28120641 (-) False AMCG00017906
AMCG00017907 mRNA upstream 594242 28434032 ~ 28443288 (-) True AMCG00017907
AMCG00017908 mRNA upstream 617906 28457696 ~ 28457938 (-) True AMCG00017908
AMCG00017909 mRNA upstream 729170 28568960 ~ 28569655 (-) True AMCG00017909
TU117034 other downstream 1728177 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 1730446 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 1822759 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 1822759 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 4516297 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 263509 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 1034371 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 1429445 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 2788198 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 4422986 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile