RNA id: TU117337


Basic Information

Item Value
RNA id TU117337
length 1107
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00017906
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28098905 ~ 28144589 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAAAGTCAACCTCCTCATCACTTTGGCTCTCACTCAGTGATGCCGCTTATTTTTGGGGTGAACCTGTAAAGAGGGAGGCAGCAGCGGGctccttttttttaatcctttgattccttcttttgtttcttctgttcttttctttcttttccgtatatatatttttttattcttcctttaTTAGCGTGGCTCATCACCTTAATCTAtttgtgttcttgttcttgttttttttttaattttgtcatttgtttttttgttgttgttgttgttgttgttttttaaataaatatatatattttcccatttcatcttaattattgattgcttgattgcctggtcggtttatttatgtgtttgtggtGTCTATTCATTTTGTGTTGGCAAGGTTAATGACAGAGTTCAGGGGATTTATGTTGCAGAGCCTTGCTTAGCAGATCGCTGTAAAAGAGAGGGCAATATTGGGCTGTTTCCCTTCTGACACTAAGGACGTCTATAACTTTCGCTTATAGAGACGACGGCAACTCCAAACTAACATGGCAGTCAGACTGTGTGATGTGGCTTCTCTGCTCAGAAGTGGTTCGTGGGCAGCAGAGCCGTGGAATGGGCAGGTCATCGCCGCCATGGAGGCCCAGCTCTCGAACGGACCCGCCTGTAACAGCACCTCCAACGGCCCCACCACGATCTCGAACAACTGCTCCTCGCCGGTCGAGTCGGGGAGCATAGAGGACAGTAAAACTAACTTGATAGTCAACTACCTGCCTCAGAACATGACCCAGGAGGAGCTCAAGAGCCTGTTCGGCAGCATTGGCGAGATCGAATCCTGTAAATTAGTGCGAGACAAAATCACAGGGCAGAGCCTAGGCTACGGCTTCGTGAACTACGTGGACCCTAAAGACGCCGAGAAAGCCATCAATACTTTAAACGGGCTGAGACTGCAGACCAAAACAATAAAGGTCTCCTACGCTCGGCCCAGCTCGGCCTCTATCCGAGACGCCAACCTGTATGTCAGCGGCCTGCCGAAGACCATGACGCAGAAGGAACTGGAGCAGCTCTTCTCACAGTACGGGCGCATCATCACTTCTCGCATCCTGGTGGACCAGGTGACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117336 lncRNA downstream 6141 28093468 ~ 28097158 (-) True G94060
TU117305 lncRNA downstream 263509 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA downstream 263509 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA downstream 263509 27838251 ~ 27839790 (-) True AMCG00017902
TU117308 lncRNA downstream 263509 27838251 ~ 27839790 (-) False AMCG00017902
TU117353 lncRNA upstream 275327 28419916 ~ 28420262 (-) True G94073
TU117354 lncRNA upstream 280443 28425032 ~ 28425243 (-) True G94074
TU117425 lncRNA upstream 589235 28733824 ~ 28735744 (-) True G94137
TU117522 lncRNA upstream 1062881 29207470 ~ 29207804 (-) True G94218
TU117556 lncRNA upstream 1141618 29286207 ~ 29286747 (-) True G94246
AMCG00017903 mRNA downstream 258528 27842212 ~ 27844771 (-) True AMCG00017903
AMCG00017902 mRNA downstream 263618 27838254 ~ 27839681 (-) False AMCG00017902
AMCG00017899 mRNA downstream 379568 27698901 ~ 27723731 (-) True AMCG00017899
AMCG00017895 mRNA downstream 670723 27427479 ~ 27432576 (-) True AMCG00017895
AMCG00017893 mRNA downstream 677067 27415574 ~ 27426232 (-) True AMCG00017893
AMCG00017907 mRNA upstream 289443 28434032 ~ 28443288 (-) True AMCG00017907
AMCG00017908 mRNA upstream 313107 28457696 ~ 28457938 (-) True AMCG00017908
AMCG00017909 mRNA upstream 424371 28568960 ~ 28569655 (-) True AMCG00017909
AMCG00017911 mRNA upstream 505352 28649941 ~ 28664695 (-) True AMCG00017911
AMCG00017916 mRNA upstream 549959 28694548 ~ 28698519 (-) True AMCG00017916
TU117034 other downstream 1993225 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 1995494 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 2087807 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 2087807 26012661 ~ 26015492 (-) False AMCG00017866
TU116216 other downstream 4781345 23318126 ~ 23321954 (-) False AMCG00017780
TU117465 other upstream 729572 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 1124646 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 2483399 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 4118187 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 4127105 32271694 ~ 32276372 (-) True AMCG00018004

Expression Profile