RNA id: AMCG00017910


Basic Information

Item Value
RNA id AMCG00017910
length 5181
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00017910
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28631892 ~ 28646750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAACAGAAAAGGACAGTCATGTGGCGGATGAAAGACTGATATTAGCACAACCCAGCAATGTTCACCAGACCGAAAACTTGATCACAAAATTGCATAATGGTAACCAATTACCAGAAGTGCCTCCTCAACAAATCAATGGGGATACCAATTGGAACCATTTTAATACCAACCTGGGAGTTAACCCAATGAAgagacaccaagagaatggctCCAGCCCCACTGTAACGCAGGACTTGGAACAAATGCAGCTAATTAAAAACGGAGGGATTAAACACAAATTTAATGAGCCATCGTCGCTGGGGCTTCATCAGTCCAAAAAAGCCCGTCTGGACGTGGAGGTGAATGGACAAGGAAAGGACCCAACTGAAGATAATGTGATCACCGGCTGGAGCCAAAAAGAGAACTTCGGGATGGACAGAAAACTGTGCAGCTTTCCAGACATTTCAGAGGCTTCCGAGTGTGACGTCGCACGGACCCCTGGTGTCCACACGCACAAGGAGAAGAAACTGGACAACAAAAACTGTAACTTCTCCAATGGGGACATGTTCTCTAACTCCAGGAACAAGCAAGTGCCAATTCCTAATGGTGCTACGGTTACTGCTTCTCCCGTGGAAGACATACCCGGTGATCTGCTGGAGAAAACGTTGTCTCAGTATTACCCAGACCATGTGTCCATTGCAATGCAGAACAATGCATCTGAAGAACATGCAATCAGGAGCCCAGCTGTAAGTGACTTTTCCGAGCAGGCCAGGGATTCCCCATCACATACCTCAGGTTTGCCCATTTCACCCCCGAACTCTGCCTCTGTACGGCCAGATACGATATCCCCAGAATCCCATACCAACAGCAGTTACAACTCACCATTTGGCATGGATGGGTACCCCACTGAGTTCCAAGCAAAGCACCACCAGCAGCAACATCAACAACAGCAGCCTTACCCTCTCCAAGATGATCCAGCTGAAGTCGAGCAACACTCACAGGGCCAGGAGGGGCAGGTCCCCGGGACTGTCACAGCTGCAAGACCAGGAAGCAACTTACCAGATCAGAACAACACCGAGTGCTTAAGTCAAGACTTCAGTCCAGAACCCTACCTTTCCATGGTGGAACCTAGCATCCTTCTGGAGGAGGTAGCGGAGAAGGAAGCTGACAGGTTCTCCCCCTTTACAGATAAAGCTCTAGAAAGGACAATGAAAAATGAGGACACAGAAAGCGGGCATCTGTCGCGGGGCATGAGTCCCCACTTGCAGCCTCAGAAAAGCCAACAAGGGCAGCCCTACATGACACACCTAGACCACAGCAATGCAGCCGAAAGGAGCGGTTTCCTGGGCTCACCTGGCTCTCGCCAACTGAGGCAGGCAGTCCATCCACAGCTGACTGACGACGCACAGATGGCTAGCACTGACACGAAACATCAGCCCCCCTACCGGAGCCAGCAGGATCAGAAATCTCTCCGGTACCTACTGGCCCGTCAAATGCGAAGTGGTGAAACGGACAATGACATCCCCTTTAAAGGAGGGTCGGAGATGTTGCAGCACGTGGGCTCCTATCCCGAGTTGAACTGGATCGATCTGAATTCCCCCCAGCCTCAGCAGCAGATGTGGAAAGATTTCAGCCCGCAGCAAAAGCAGCAAACATCAATGCAGAGTCAAGGGCAAAGGCAGGATCCTGATGCCTTACAGGGATTTCAGATGCAGAGTTTCAGTCAGACAGAGCAACGTGAGAAACAGATGCCCGATGCCTACAAACCAGATGAAACGCACGATCAAGCACAGCACCCCGCCACCTCCGAATGGCAGCGGCAGAATACTAACACCCCTCCTGGTCTACAGGTACAGTCTCAGATGCAAGCCCACAAACTGCAGCACATTTCCTCACAGTGTAGTCTTTCCCAGCAGCAGGTACAGCATCCTTTCCACTCCCAAATACACCCAGAGCACTTATGTGAGAGCACACAACAAGACATAGAGCACATTCTATCGTCAGACTTTTTGCAGCAGCCACAGCAGCCACAACAGCAGGCCCCATCTGAAGAGCAGCAGGTACTTAACGCACTTCAGCCGCAGCCGGCGCAAGACCCGCAGGGTGGTGCAGGCACGGCTCAGCCGCAAGATCCCTCTCAGAGACATTTTGACTCTTTGAACAGGTTGAAGCTTGAGGAGTTCATTAGTTTAGAGAAACAGCTCAAGTCCTCCAACTGTAAGTCCCAGCCTGTGcaacagcaggagcagcagcagacaCTATCAAATCCAACTGGCAAGAACACCCCCAGGTTCTTAGATTCCTCCATGCCCAAAGCACAGCCTCTGCAAAATGACACGGCGCACTTTGCACACAGGACAGCCGACGGCACAGTGAACCAATTCAAAAAAGCAACGGAGATGCGTCAGCTGCAGTACTCTCCAAACCCCGCTACCCAAAAGCAATACTTACAGCCGCATCACAGCCAAGAACCGCTGAACCACACGAACTTCCCGCCACCAACACAGCAACAACCTCAACTACCACAAGGTGCTTTAAACCAACACATGGGACACATGACTGCACAGATGTATCCTAAAACTGAATCGCAGGACTCGTGTGCACAGTCTCAGCAAGGGCAGCTCCAGCAACATCACCGAGAACTTCAGAAGCATGCAGCGCTGCGGCTACACCTGCTGCAGAAACAGGAGAAGCAGGCGTACCAGCAGAACTTAGAGGACTTCAAGAGCATTCTGCAGTCCATCAAAACCGAACACAAACCTCAGTGTGAACCTACGGTGCCTCAGCAAGTCACAAACTCACccatgaacaaaacaataaagctgGAGTTCCCGCAGATTAACTGCGACCAGTCTCGGCAGAAGAGCATTCTCGCCACCATGGAGCAGCAGCTGAAGCAGTACCAGCTCTCGCCTGTGTTTGAGAGGAAGTCACTGGTCATTAAGTCCCCCAAGCAGGTCAAGGTGGAGACGTCCGGCCCCGTGACCATACTGTCGACCAACGCCGACCTGGGAGGAGAGGACATGACCACAGCGCCCCAGAAGAAACCTTTCTCCGACTTCATGCCGACCAAGAAGACGGAGCCCAACCTCCACAACTTCATAGAGTCTCCAATGAAGCTCCTGGACACTCCCATCAAGAACTTGTTAGACACCCCTTTGAAGACTCAGTTTGGCCAAACGGGCAAAGCTATCAGGATTGAGAAGGTGGTCTACACCGGGAAGGAGGGTAAAAGCATGCAGGGATGCCCCATTGCCAAATGGGGCATCCACTCCAGCCTGGCAGACCGACTCTACTTGGAGCTGAGCAGCACGCTGAGGAAGCACGGCGCCCTGACCAACCGGCGATGTGCGCTCAATGAGGAGAGAACGTGTGCTTGTCAAGGACTGGATCCCGAGACCTGCGGAGCCTCCTTCTCCTTCGGGTGTTCTTGGAGTATGTACTACAACGGGTGTAAATTCGCCAGGAGTAAAATCCCTAGGAAATTCAAGCTTCTTGGGGATGACCATAGAGAGGTCGAATATGAAAGCAGGGCGTTGGACTGTCGGCTGGGCACGAAGGAAGGTCGTCCTTTCTCTGGGGTGACGGCCTGTCTGGACTTCTGCGCGCACTCCCACCGGGACCTCCACAACATGCCAAGTGGCAGCACTTTGGTATGCACTCTGACCAGAGAAGACAATCGAGAAATTGGGAAGATCCCGGAGGATGAGCAGCTCCATGTGCTGCCATTATACAAGGTCTCACCGACTGACGAGTTCGGGAGTGTGGAGGCGCAGCAGGAGAAGATAAAGACTGGTGCCATTCAGGCAGAGAAGAACATTCAAGCGAGATTGAAGCAAAGCACTTATGAGAGCATGGGCAACAACACGTCCGGGACAGGTCCCCACCCTGGCCTCCAGCAGCACCCTCTCAGCAGTCATCAGCAGAAGAATAACCCAAGTCATTACCCTGTATCGCATCCCATGCACCCATCCAGTTTCACCAGGTTTCCCAGCCCTGCAGATTCATTTCCTGGCACTTCGCAATCAGGCAGCCCCTACCAAGACTCCCCTACGTCCACGCATCCCTACTTGAGCCCTTTACGTGTCGCAAACCCTTACCTGAATGGGGCAAATCCTACAAACTCTTACCCCGCCTCTTTAAACCCCAATAACCTTTACCCAGGATATCAATGCAATGGGAACATGCCCATCGACGGCTACCACCCCTACTACATGTCGAACCCAAAACACATAGACGTATATCGGCATCAAACCCCGGAGTCCCTCAACAAGATCAATCTGCCGCAGCTGTACTCTCAGCAGCAGTACAGCCCCCATCAGCACTATGGAGTCGGCTACCCGCCCCGGTATCCCGACCCCAGTATCCAGGTCAATGGCTATAGCAACTGCAATATGAGACCCAACATCCACCCCATGGGTCACTACCCATCCTTCGGTCCCAATGTTGGGGCCGACGCACAGTATTTGGAGGCCATTTCGCGGCCACCGTCAGCCCACCCGGGTCTGGACTGCACAGCTGTTGGCAAAGGAAACCAGTACGGCGGGTACCCCAGTCCATACGGGGCAAGCCCCATCGCCCCGCCGGAGCCCGGGACGCCGAAACCCAAAGAGGACGTGTGGTCGGATAGCGAGCACAACTTTCTGGACCCGGACATCGGCGGCGTGGCGGTGGCGCCCAGCCATGGCTCCATCCTCATCGAGTGCGCCAAGCGGGAGCTGCATGCCACCACGCCGCTGAAGAACCCCAACCGCAACCACCCCACGCGCATCTCCCTCGTCTTCTACCAGCACAAGAGCATGAACGAGGCCAAGCACGGGCTGGCACTGTGGGAGGCCAAGATGGCGGAGAAGGCccgggagaaggaggaggagtcGGAGAGGCAGGGCTCGGACAGCACGCCCCAGAAAAACAGCGGGGGCAAGAAGGCCAAGCGGGAGCACACCGAGGGGCAGGAGAAGGCTGAGCCGCCCTACAAACGCTTCATCCAGACCCTGACACAGAGGTCCATGTCCTGCACCACGAACTCCATCGTCAATACGTCTCCCTACGCCTTCACAAAGGTGACGGGGCCTTACAACAGCCGATGGTCTGTGCCGGATCTGCGTCATGTGACTGGTGTCATCAGCACCAGCGTGGCCCGAGCCCGGGAACGCCGCAGGAGCCCGGGCTTCGGACCCGGGGGCAGCCATGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117345 lncRNA upstream 186967 28442766 ~ 28444925 (+) True G94069
TU117333 lncRNA upstream 529798 28100733 ~ 28102094 (+) True G94057
TU117331 lncRNA upstream 532678 28097733 ~ 28099214 (+) True G94055
TU117309 lncRNA upstream 790631 27841053 ~ 27841261 (+) True G94039
TU117246 lncRNA upstream 931164 27698724 ~ 27700728 (+) True G93986
TU117385 lncRNA downstream 4398 28651148 ~ 28652294 (+) True G94104
TU117487 lncRNA downstream 393260 29040010 ~ 29041944 (+) True G94189
TU117545 lncRNA downstream 626997 29273747 ~ 29274011 (+) True G94236
TU117555 lncRNA downstream 639443 29286193 ~ 29286745 (+) True G94245
TU117566 lncRNA downstream 660350 29307100 ~ 29310853 (+) True G94255
AMCG00017905 mRNA upstream 712752 27916426 ~ 27919140 (+) True AMCG00017905
AMCG00017904 mRNA upstream 722328 27907744 ~ 27909564 (+) True AMCG00017904
AMCG00017900 mRNA upstream 794766 27811222 ~ 27837126 (+) True AMCG00017900
AMCG00017901 mRNA upstream 844810 27773853 ~ 27787082 (+) True AMCG00017901
AMCG00017897 mRNA upstream 863564 27744913 ~ 27768328 (+) True AMCG00017897
AMCG00017914 mRNA downstream 26658 28673408 ~ 28692303 (+) True AMCG00017914
AMCG00017913 mRNA downstream 53293 28700043 ~ 28705029 (+) True AMCG00017913
AMCG00017915 mRNA downstream 75189 28721939 ~ 28735137 (+) True AMCG00017915
AMCG00017912 mRNA downstream 121543 28768293 ~ 28787501 (+) True AMCG00017912
AMCG00017920 mRNA downstream 223124 28869874 ~ 28897965 (+) True AMCG00017920
TU116638 other upstream 3916271 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 7809945 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 7816346 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 9103599 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 9208213 19421310 ~ 19423679 (+) False AMCG00017710
TU117593 other downstream 786662 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 3760679 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 3814548 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 3860940 32507690 ~ 32601449 (+) True G94857

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU325397 True 4688 lncRNA 0.48 2 NW_019171037.1 275770 ~ 280517 (-)