RNA id: TU117380



Basic Information


Item Value
RNA id TU117380
length 869
RNA type TUCP
GC content 0.55
exon number 2
gene id AMCG00017910
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28631892 ~ 28646750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAACTCCAAGGCAGAGAAGAACATTCAAGCGAGATTGAAGCAAAGCACTTATGAGAGCATGGGCAACAACACGTCCGGGACAGGTCCCCACCCTGGCCTCCAGCAGCACCCTCTCAGCAGTCATCAGCAGAAGAATAACCCAAGTCATTACCCTGTATCGCATCCCATGCACCCATCCAGTTTCACCAGGTTTCCCAGCCCTGCAGATTCATTTCCTGGCACTTCGCAATCAGGCAGCCCCTACCAAGACTCCCCTACGTCCACGCATCCCTACTTGAGCCCTTTACGTGTCGCAAACCCTTACCTGAATGGGGCAAATCCTACAAACTCTTACCCCGCCTCTTTAAACCCCAATAACCTTTACCCAGGATATCAATGCAATGGGAACATGCCCATCGACGGCTACCACCCCTACTACATGTCGAACCCAAAACACATAGACGTATATCGGCATCAAACCCCGGAGTCCCTCAACAAGATCAATCTGCCGCAGCTGTACTCTCAGCAGCAGTACAGCCCCCATCAGCACTATGGAGTCGGCTACCCGCCCCGGTATCCCGACCCCAGTATCCAGGTCAATGGCTATAGCAACTGCAATATGAGACCCAACATCCACCCCATGGGTCACTACCCATCCTTCGGTCCCAATGTTGGGGCCGACGCACAGTATTTGGAGGCCATTTCGCGGCCACCGTCAGCCCACCCGGGTCTGGACTGCACAGCTGTTGGCAAAGGAAACCAGTACGGCGGGTACCCCAGTCCATACGGGGTCCAGAACCCCTCGATGTTCAGTTCACCCCAGGACTCTTTCCACATGCAAATCAAACCAGAAATGAATCTGCACGGTGCTAACGGGATGGCGAGGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117345 lncRNA upstream 197805 28442766 ~ 28444925 (+) True G94069
TU117333 lncRNA upstream 540636 28100733 ~ 28102094 (+) True G94057
TU117331 lncRNA upstream 543516 28097733 ~ 28099214 (+) True G94055
TU117309 lncRNA upstream 801469 27841053 ~ 27841261 (+) True G94039
TU117246 lncRNA upstream 942002 27698724 ~ 27700728 (+) True G93986
TU117385 lncRNA downstream 7165 28651148 ~ 28652294 (+) True G94104
TU117487 lncRNA downstream 396027 29040010 ~ 29041944 (+) True G94189
TU117545 lncRNA downstream 629764 29273747 ~ 29274011 (+) True G94236
TU117555 lncRNA downstream 642210 29286193 ~ 29286745 (+) True G94245
TU117566 lncRNA downstream 663117 29307100 ~ 29310853 (+) True G94255
AMCG00017905 mRNA upstream 723590 27916426 ~ 27919140 (+) True AMCG00017905
AMCG00017904 mRNA upstream 733166 27907744 ~ 27909564 (+) True AMCG00017904
AMCG00017900 mRNA upstream 805604 27811222 ~ 27837126 (+) True AMCG00017900
AMCG00017901 mRNA upstream 855648 27773853 ~ 27787082 (+) True AMCG00017901
AMCG00017897 mRNA upstream 874402 27744913 ~ 27768328 (+) True AMCG00017897
AMCG00017914 mRNA downstream 29425 28673408 ~ 28692303 (+) True AMCG00017914
AMCG00017913 mRNA downstream 56060 28700043 ~ 28705029 (+) True AMCG00017913
AMCG00017915 mRNA downstream 77956 28721939 ~ 28735137 (+) True AMCG00017915
AMCG00017912 mRNA downstream 124310 28768293 ~ 28787501 (+) True AMCG00017912
AMCG00017920 mRNA downstream 225891 28869874 ~ 28897965 (+) True AMCG00017920
TU116638 other upstream 3927109 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 7820783 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 7827184 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 9114437 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 9219051 19421310 ~ 19423679 (+) False AMCG00017710
TU117593 other downstream 789429 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 3763446 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 3817315 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 3863707 32507690 ~ 32601449 (+) True G94857

Expression Profile