RNA id: AMCG00017934


Basic Information

Item Value
RNA id AMCG00017934
length 1554
RNA type mRNA
GC content 0.62
exon number 15
gene id AMCG00017934
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29355039 ~ 29365548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCGAGATTTCAAGTCGGGGGATCTGATTTTCGCCAAGATGAAAGGCTATCCACACTGGCCGGCCCGGATCGACGAAGTCCCCGATGGAGCCGTGAAGCCGTCCACCGCCAAGCTGCCCATCTTCTTCTTCGGCACGCATGAGACCGCGTTCTTGGGCCCCAAAGACATCTTCCCGTATTTACCGAACAAAGACAAATATGGCAAGCCCAACAAGCGGAAGGGCTTCAACGAGGGCCTGTGGGAGATCGAGAACAACCCTAAGGTGGAGCTCACTGGTCCGAAGGTCGCTAAACGCGCCCGCCTGGCAGCCGCTGACCCCGAGGGCGAGCAGGACGAGCCGGCGGGGGTCACGGACGACTCGGAGCCGATGCCCGAGTCTGCGGATGACTCGGCCCAGAAGGGAACCCCGGACACTCCGGTGAAAGCCAAGAGGGGACGGAAGAAGAAGagtgAGACCGAACAGGACTCGGAGAGGGATGAGGTGCCGACCAGCCCCGCCTCCAGCCCTCCAGTGGCCGAGGCGCTCACTCCGAAGCGCAGGGGTCGGAAACCCAAAGCAGAAAAGTTGCTGCTtttacaacagcagcagcagcagcagggcccCCCGGACCCCCGCAGCTCTGGGAGTGAAATGGACTCCAGCGAGCCGGAGAAGAAGAGGAAGCGCGGCCCGGAGGACAAGTCCGCCAAGGCCCAGAGAGCGGACAACGACGAGGACAGGAAGACGGacgggaggaagaggaaggaggaggcCGAGGGCAAGAAGGAGCCAGAGGCCAAACGGAGGAGGAACGCCAAGGGGGACACGTCGTCCGAGtcggaggaggatgaggaggcgAGTACGCGGTCTCTCGGCTGTAAGAATAAGAACGACAGGTTCGCGGCGGCCAGGAGGCGCAACCTGCTGAAGGCGCAGCACGAGGCCCTGGAGATGGACGAGCGCCGGCGCAAGCAGGACGAGCCGAAGGCCGCGGAGCAGGGcaaggaggaggggaagaaaggaGAGGAGAAGAAAGTAGACAAGAAGAAAGACGTGTCGACGGAGGCAAGGCTGCAGAGGCTACACGGAGACATCAAGATATCCCTGAAGATTGACAACCCTGACGTGAAGAAGTGCATCGAGGCGCTGGACGAGCTGGGCACACTGCAGGTCACCACCCAGCACCTGCAGAAGCACAGCGAACTCATCGCCACGCTCaaaaagATCCGCAGGTTCAAAGCCAGCCAGGACATCATGGACAAGGCCACGATGCTCTACAACAAGTTCAAGACCATGTTCCTGGTGGGTGAGGGCGACTCGGTGCTCAGCCAGGTGCTCAACAAGTCCCTGGCGGAGCAGCGGCAGCACGAGGAGGCCAAGAAGGGCGCGCTGAAGAAGGCAGAGCAGGCCAGGGATCAGGGGACAGAGAACAAGGCGGTGAACGGGGACGCCAGCCCCGGGGAGGGCAGCCCAGCCCAGCGGGACGAGGACGGGGACCAGAGGGCGGAAGAGTGTGGCCCGGCGGAGCACAGAAAGGCGTGCTCAGTGTTCGGTGTAGAGCTGCCCTGA

Function

GO: NA

KEGG:

id description
K25057 PSIP1, LEDGF; PC4 and SFRS1-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117556 lncRNA downstream 68292 29286207 ~ 29286747 (-) True G94246
TU117522 lncRNA downstream 147235 29207470 ~ 29207804 (-) True G94218
TU117425 lncRNA downstream 619295 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 929796 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 934777 28419916 ~ 28420262 (-) True G94073
TU117670 lncRNA upstream 546434 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 630701 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 632806 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 632806 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA upstream 634325 29999873 ~ 30002282 (-) False G94359
AMCG00017932 mRNA downstream 22560 29307083 ~ 29332479 (-) True AMCG00017932
AMCG00017935 mRNA downstream 50235 29288829 ~ 29304804 (-) True AMCG00017935
AMCG00017933 mRNA downstream 71208 29274894 ~ 29283831 (-) True AMCG00017933
AMCG00017930 mRNA downstream 81755 29273051 ~ 29273284 (-) True AMCG00017930
AMCG00017929 mRNA downstream 82107 29269281 ~ 29272932 (-) True AMCG00017929
AMCG00017938 mRNA upstream 159887 29525435 ~ 29527497 (-) True AMCG00017938
AMCG00017937 mRNA upstream 172607 29538155 ~ 29544905 (-) True AMCG00017937
AMCG00017939 mRNA upstream 211561 29577109 ~ 29584432 (-) True AMCG00017939
AMCG00017947 mRNA upstream 599951 29965499 ~ 29966626 (-) True AMCG00017947
AMCG00017944 mRNA upstream 605542 29971090 ~ 29975805 (-) True AMCG00017944
TU117547 other downstream 81871 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 479116 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1210450 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3244965 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3247234 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 1262440 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2897228 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2906146 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 2928472 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 3089537 32455085 ~ 32456410 (-) True G94835

Expression Profile