RNA id: AMCG00017937


Basic Information

Item Value
RNA id AMCG00017937
length 2151
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00017937
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29538155 ~ 29544905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGATCGGCAGCGACAATGCAGAGCTCGCCTTGAACGATGGGTCCATTGTGCGCGAGGAGGATGCTGCAGGCAAGGTGCTGGACCGCTGGGCCATCATGTCCCGGGAAGAAGAGATTATTACCCTGCAGCAGTTCCTGCGGTTCGGAGAGACCAAGTCCATCGTAGAGCTGATGGCCATCCAGGAGAAGGAGGGCCAGGCGGTGACGGTGTCCACGTCCAAGACCGACTCCGACATCCGGACGTTCATCGAGAGCAACAACCGCACGCGCAGCCCCAGCCTCCTGACGCACCTGGAGAACAGCAACCCGTCCAGCATCCACCACTTCGAGAACATCCCCAACAGCCTGGCCTTCCTGCTGCCCTTCCAGTACATCAACCCCGTGTCGGCGCCCTTGCTGGGGCTGCCCCCCAACGGGCTGATGCTGGAGCAGCCCGGACTGCGGCTGCGTGAGCCCAACCTGCCCGCCCAGAGTGAGCCCAACGAGAGCAGCGAGTCCGAGatgCACCGCATGAGGCGCATGGGCTCAACCTCGCGCAAGGGCCGCGTGTGCTGCAATGCCTGCGGCAAGACCTTCTATGACAAGGGCACGCTCAAGATCCACTACAACGCAGTGCACCTGAAGATCAAGCACCGGTGCACCATCGAGGGCTGCAACATGGTCTTCAGCTCCCTGCGCAGCCGCAACCGCCACAGCGCCAACCCCAACCCCCGGCTGCACATGCCCATGCTGCGGAACAACCGCGACAAGGACCTCATCCGCTCCAACTCGGGCTCCGCCACACCCGTCATCTCCTCGGCCAAGAGCGGGCTGACCCTCACCAGCCCCGGCCGGCCGCCCATGGGCTTCGCCACTCCTCCTCTGGACCCTGTGCTGCAGTCGCCCCTGCAGAGCCCGCTGGTCTTTCCTTCCCTGAAGACGGTGCAGCCAGTGCCACCGTTCTATCGCAGCTTGCTGTCCCCTGCAGATCTGGTTAGCCCTCCTGTCTCGATGCCCACCAGCCCCATCATCCCTGCAACAACCAACAGCACCTCACTAATGGAGCAACAGCAACAAGCACTGGCTCCCAGCGCCCCGGCTCCACACGCCTCTGAATCGGTGTCCCTCATTCACAGCCTGCCCATCCCGAGCGTCCAGGATCCCACCGCAGACCCCACGCCAAAGAAGAAGCCCCGGAAGTCCAGCATGCCAGTCAAGATCGAGAAGGAGGTGATCGATGTGGCCGATGAATTCGACGAGAAGGATGAGGAGGATGACCAGACGATGGACGGAGTGATGAGCAGCCAGGGCTGCCACCATCACCACCAAcaccaccaacaccaccaccaccacccacaCCACCCACACCACCCACACCACCCACATCACCACCACATCAACAGCAAcggcaacagcaacaacaacaacaatgccaGTGGCGGAGGCAGCTGCCACCACTCCCCCTCCCAGGACGAGATGAGCCCCGGCCTGGCGCTGAAGAGCATGCTTcggcaggagcaggaggagcgCCGGGGGATGGGCAGCGAGCTGCGCTGCGTCGACAGCTTCACCTCAGAGGACCAGGACCATGAGAGGGACTTTGAGAACGAGTCAGAGAGCTCGGAGACCAAGATGTGCTGCGGGGACGAGCCCATGGACGCGGAGGAGGCCAGCCGGCACCTGAGGAGTCGCCTGGAGaaagagcaggaggaggaggaggaggagaaccACCTGAGGGAGAAACTGGAGGGAAAGCGCCACTCCTCACCCTCCCCACACCAGCCCGTCATCAAGATCAAAGAGGAGCTGAGCGACCCCACGTACGACATGTTCTGCATGAGCCAGTATGGCCTGTACAATGGCGGGGGGGGGATGGCCGCTGCTGCAgcagccgccgccgccgctgccAGCATGGCCGCCCTGCATGAGAGCTTTGTCTCCTCCATGGGCTACGGCGCCAGCCCGCCCAAGTTCTCCTCGCCGCCCTCCTCCGATGGGGACCTGTGCTCCAGCCCCGACCCCAAGATCTGCTATGTCTGCAAGAAGAGCTTCAAGAGCTCCTACAGCGTCAAGCTACACTACAAGAACGTGCACCTGAAGGAGATGCACGTGTGCACAGTGGCTGGCTGCAACGCCGCCTTCCCCTCACGGAGGAGCCGAGACAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117556 lncRNA downstream 251408 29286207 ~ 29286747 (-) True G94246
TU117522 lncRNA downstream 330351 29207470 ~ 29207804 (-) True G94218
TU117425 lncRNA downstream 802411 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 1112912 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 1117893 28419916 ~ 28420262 (-) True G94073
TU117670 lncRNA upstream 367077 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 451344 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 453449 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 453449 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA upstream 454968 29999873 ~ 30002282 (-) False G94359
AMCG00017938 mRNA downstream 10658 29525435 ~ 29527497 (-) True AMCG00017938
AMCG00017934 mRNA downstream 172607 29355039 ~ 29365548 (-) True AMCG00017934
AMCG00017932 mRNA downstream 205676 29307083 ~ 29332479 (-) True AMCG00017932
AMCG00017935 mRNA downstream 233351 29288829 ~ 29304804 (-) True AMCG00017935
AMCG00017933 mRNA downstream 254324 29274894 ~ 29283831 (-) True AMCG00017933
AMCG00017939 mRNA upstream 32204 29577109 ~ 29584432 (-) True AMCG00017939
AMCG00017947 mRNA upstream 420594 29965499 ~ 29966626 (-) True AMCG00017947
AMCG00017944 mRNA upstream 426185 29971090 ~ 29975805 (-) True AMCG00017944
AMCG00017945 mRNA upstream 431839 29976744 ~ 29983256 (-) True AMCG00017945
AMCG00017949 mRNA upstream 466405 30011310 ~ 30030524 (-) True AMCG00017949
TU117547 other downstream 264987 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 662232 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1393566 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3428081 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3430350 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 1083083 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2717871 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2726789 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 2749115 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 2910180 32455085 ~ 32456410 (-) True G94835

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU11987 True 2396 lncRNA 0.53 1 NC_053112.1 30588500 ~ 30590895 (+)