RNA id: AMCG00017939


Basic Information

Item Value
RNA id AMCG00017939
length 474
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00017939
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29577109 ~ 29584432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACAAACACACCCCGCATTCCTGCACCGCTGGGTCCCGCGAGAAGCAGCGTTTCCCCCGCGAAATGAGCTCCACGGGCTGGCAGGGGGCCATACGCTGCACCCTGGTGAACTGCACGTGTGAGTGTTTCCAGCCTGGCAAGATCAACCTGAGGACATGTGACCAGTGTAAGCACGGCTGGGTGGCACATGCGCTGGACAAGCTGAGCACGCAGCACCTGTACCACCCCACGCAGGTGGAGATCGTGCAGTCCAACGTGGTGTTCGACATCAGCAGCCTCATGCTGTACGGCACGCAGGCCGTGCCCGTGCGCCTCAAGATCCTGCTGGACCGGCTCTTCAGCGTTCTGAAGCAGGAGGAGGTGCTGCACATCCTGCACGGCCTGGGCTGGACGCTGCGCGACTACGTCCGGGGATACATCCTGCAGGTGAGTGGCCCGTGGGCTCCGGACACAATGGGACACGAGCCCTAG

Function

GO:

id name namespace
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117556 lncRNA downstream 290362 29286207 ~ 29286747 (-) True G94246
TU117522 lncRNA downstream 369305 29207470 ~ 29207804 (-) True G94218
TU117425 lncRNA downstream 841365 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 1151866 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 1156847 28419916 ~ 28420262 (-) True G94073
TU117670 lncRNA upstream 327550 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 411817 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 413922 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 413922 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA upstream 415441 29999873 ~ 30002282 (-) False G94359
AMCG00017937 mRNA downstream 32204 29538155 ~ 29544905 (-) True AMCG00017937
AMCG00017938 mRNA downstream 49612 29525435 ~ 29527497 (-) True AMCG00017938
AMCG00017934 mRNA downstream 211561 29355039 ~ 29365548 (-) True AMCG00017934
AMCG00017932 mRNA downstream 244630 29307083 ~ 29332479 (-) True AMCG00017932
AMCG00017935 mRNA downstream 272305 29288829 ~ 29304804 (-) True AMCG00017935
AMCG00017947 mRNA upstream 381067 29965499 ~ 29966626 (-) True AMCG00017947
AMCG00017944 mRNA upstream 386658 29971090 ~ 29975805 (-) True AMCG00017944
AMCG00017945 mRNA upstream 392312 29976744 ~ 29983256 (-) True AMCG00017945
AMCG00017949 mRNA upstream 426878 30011310 ~ 30030524 (-) True AMCG00017949
AMCG00017955 mRNA upstream 527858 30112290 ~ 30112964 (-) True AMCG00017955
TU117547 other downstream 303941 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 701186 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1432520 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3467035 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3469304 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 1043556 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2678344 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2687262 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 2709588 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 2870653 32455085 ~ 32456410 (-) True G94835

Expression Profile