RNA id: AMCG00017941



Basic Information


Item Value
RNA id AMCG00017941
length 651
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00017941
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29757554 ~ 29764700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCAGAGGACGGCCGAAGGTTCCAACAGCAAGACGAGGACGACAGCCCGTCCGTTGTGCTCCGCGATCTCGTGTTGGAGGATGACATTAAGGCCGCCAGGCAGCAGGTTGAAGAGATGCACAACAAATGCAACGACCTGGCCGCTCAGCTGGGGTCCAGGGAGGCCGAGCTGGGCCACAGAGAGGCTGATGTGACCAAACTAAGGCAAAGCACGGAGCACGCGGCGCAGCAGGCCGAGCTCATCCAGCAGCTGGAGACCCTCCACCTGGACGCCCAGAAGGTCCTGCGCAACCAGGAGGACGCCCACACCCACGAGACCATCTCCTATCAGAAGCTGTACAATGAGCTGAGCATGTGCTACGAAGCCCTGAAGTCCAGTGAGACCCAGCTGCGTCAGAGCCACGTCTCGCTGACGACACAGCTGCACCAGAAGGAGCAGCAGATCAGCCAACTCCAGGCCAGGCTGCTGCAGACTCTCCCCACCTCCTGTCAGCAGCAACGGCAAGCAAACGCCACACAGCTGGAGATCCCCCATAGCTGCAGTCCGGGCCGGCACGCCGTTGTTTGCCCAGGCTCTGTGATGGACGCGGAGGCCGGGCCCGACCTTCCCAGCGTGAGGAGGCAGATCTCATATTTTGGGGGCCTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117632 lncRNA upstream 106480 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 180151 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 434209 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 446701 29307100 ~ 29310853 (+) True G94255
TU117555 lncRNA upstream 470809 29286193 ~ 29286745 (+) True G94245
TU117684 lncRNA downstream 213453 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 774268 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 821010 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 953478 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 1062742 30827442 ~ 30831863 (+) True AMCG00017978
AMCG00017940 mRNA upstream 639 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017936 mRNA upstream 340741 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017931 mRNA upstream 403667 29342195 ~ 29353887 (+) True AMCG00017931
AMCG00017927 mRNA upstream 499847 29250387 ~ 29257707 (+) True AMCG00017927
AMCG00017921 mRNA upstream 696830 29056616 ~ 29060724 (+) True AMCG00017921
AMCG00017942 mRNA downstream 41940 29806640 ~ 29833363 (+) True AMCG00017942
AMCG00017943 mRNA downstream 138115 29902815 ~ 29912178 (+) True AMCG00017943
AMCG00017946 mRNA downstream 188767 29953467 ~ 29954534 (+) True AMCG00017946
AMCG00017948 mRNA downstream 225946 29990646 ~ 30002319 (+) True AMCG00017948
AMCG00017953 mRNA downstream 301977 30066677 ~ 30089697 (+) True AMCG00017953
TU117593 other upstream 307207 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1113571 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5041933 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 8935607 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 8942008 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2642729 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2696598 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2742990 32507690 ~ 32601449 (+) True G94857

Expression Profile