RNA id: AMCG00017942


Basic Information

Item Value
RNA id AMCG00017942
length 2112
RNA type mRNA
GC content 0.63
exon number 12
gene id AMCG00017942
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29806640 ~ 29833363 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTTTGTTCCCCCGGCAGAGCTGCGCTCCAGACTGGGGGAAGATGGAGGGGTCAGGAGCAGCACTCCCAAAAAGGAGGGCGAAGACAGAGCGGAGCGCTCATTAAAACAGGTCGCACAGCTGGAGAGGAAGCTCCGCACCCTagagaaggagatggagaggCTGAAGGAGACCAACGCGGAGCTGGGCCGGGCTCGAGACACACTGCAGGCCTCGCTGGCCCGTCTGCGCAGCCAGGGGGAGGCCAGGGAGGCGGCGGCCAGGGAGGAGCGGGAGCAGCTGCTGACCGCCGTGGCCGAGCTGGAGGGCCGGGTGTCCGCGCTGAGGAGGCAGGCGGCCGGCGCCAAGGAGCTGAGGAGGGAGCGCGGCGTGATGCTGCGGCGGATGCAGGAGCTGCGGAGGGAGCTGGGCATCGCTCGGGCCGCCAGGGGACCGGGTGCCAGAGGGCCGCCCTGCTGCAGGGCCGGGGCCGCCAAGGTCAGGCTCCGAGCGGCCCGGCCTGGCACCTCCCTCCGACGCCGGCAAGTTTTCCTCAACCAGTCCATCAAGGAGCAGAGCGCCGTGTTCGAGGACTTCAACAGGGACGGCTGGGAGGACCTGAGCGCAGACAGCGACAGCGCCGAGGGAAGCTGGGACAGCCTGGGCGAGGTCACAGCAAGGTCAGCGAGGATCAGACGTCTGTCCCGGGAGACAGATGACTCGGCGGGCAGCAGTGGAGAGAGCGATGGGACGCGAGACACCCCACCGCGCCGCCCGGGGCCCCGCCCAGGGCCCAGGCTTTTTAAGggCTGTGCAAACTGTGAAAAGGAAAAGAGGAAAGTCCAAAAAGACAAGAGCCGCCGGCCTCGGTCTACTGACCCGTCACAGCAAGAAGAAAGTAAACAGGAGCAGAAGAGGCAGAAGCAGTCCGGGGCCCAGAAGAGACGTCTCTCACTGGCGTTGCAGCAGCGCATCGTATCTCTGAAGCAGCAGATATCTGTTCTGCAGGCCGGGTGGAGAGACGCGCGGCGCACCGCCAGGGAGCTGAGAGAAACCAACAAGCAGACAACATCACAGATGAACTCGCTCGCCCAGAGACTTCAGATCAGCAAGCAGGTTTCACAGAAGCTGACCTCCGACCTGGCGGCGCTCCAGCTGCAGAAGGACGAGTTGGAGAGGGAGGTGGGGCAGCTGAAACAGCAACTGCAGACCCTGACCGACAGGGCCGCGCAGGAGGCGCCCCCTCCGGCCCCCAGGCCGAGCCAGGACCCCCCCGGCCCCTCGCCGAAGCAATTGGAAACGGAAATAAAGCATCTCCAGAACAAGCTGAAGATCGCATCTAATGAGGTAACGAGGCACACAGCTGCCAATAAAGCCCTGAAAGCCGACTTGCAGGAGAAGGAAGAGCAGATCGGGGAGCTACAAGACAAGGTTTCTCGTATGGAAAGAGACGTCGGCATGAAACGGCAGCTGGTAGAAGATTTTAAATCCAGAATGAAATCATTTCAGGAAAACGATAAGACCCACAGACAGCTCATCGAAGAACTGGAGAAGAAAGCGTCCAACAGGAAGACGTGCATCGACTCCCTGAAGCAGAGGCTCAGCGTGGCCACCAAGGAGAAGAGTCAGTACGAGCTGACGAGCCGCAAGCTGAGGGACGATTTGGACAAGAAGAGCCAGAAGCTGCAGGAGCTCCAGTCCAAGGTGGCCGAGTGTGAGGCGGCCATGGCGGAGCTGGAGGAGACGGCGTCGCAGCAGATGCACGGGCTGGCGCTGCAGAGCGGACAGGCCCTGGAGGGCGTCCAGAAGAAGCTGGGCCTCGCACACCGGCAGCGGGAGGAGCTGGTGGCCTTCATTAAGACGCTGGCGTTGGAGATGCACTCAGATTCGCAGGAGACGAGAGCCCAGATCAGGAAAGCGAGGAAGCGGAGGCAGGAGGGCTCGGACACGGGACTGTCCACCGAGTCGATGAGCCGGGCGCAGTCCATCGCGGCGTCCATCCTGAACATGTCCCAGGCGGACCTGCAAGACATGCTGGACACCGAGCAGCAGGAATCTGAAGATGTCCGAGCCGAGAGGAGGAAAGACCAGGACTGGCTGGATCGGGTTCAGGGGATCCTCGGGCAGCAG

Function

GO: NA

KEGG:

id description
K16467 CNTLN; centlein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117632 lncRNA upstream 155566 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 229237 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 483295 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 495787 29307100 ~ 29310853 (+) True G94255
TU117555 lncRNA upstream 519895 29286193 ~ 29286745 (+) True G94245
TU117684 lncRNA downstream 144790 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 705605 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 752347 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 884815 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 994079 30827442 ~ 30831863 (+) True AMCG00017978
AMCG00017941 mRNA upstream 41940 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017940 mRNA upstream 49725 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017936 mRNA upstream 389827 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017931 mRNA upstream 452753 29342195 ~ 29353887 (+) True AMCG00017931
AMCG00017927 mRNA upstream 548933 29250387 ~ 29257707 (+) True AMCG00017927
AMCG00017943 mRNA downstream 69452 29902815 ~ 29912178 (+) True AMCG00017943
AMCG00017946 mRNA downstream 120104 29953467 ~ 29954534 (+) True AMCG00017946
AMCG00017948 mRNA downstream 157283 29990646 ~ 30002319 (+) True AMCG00017948
AMCG00017953 mRNA downstream 233314 30066677 ~ 30089697 (+) True AMCG00017953
AMCG00017951 mRNA downstream 257603 30090966 ~ 30106897 (+) True AMCG00017951
TU117593 other upstream 356293 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1162657 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5091019 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 8984693 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 8991094 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2574066 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2627935 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2674327 32507690 ~ 32601449 (+) True G94857

Expression Profile