RNA id: AMCG00017945


Basic Information

Item Value
RNA id AMCG00017945
length 1224
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00017945
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29976744 ~ 29983256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAAACCAGATAACcactttctttcattcttgcttatttttttctcccttttggGCGGGAGTTGCAAATAGACAGAATTGAGGGGCACGATCACGACTTTCTATTCTTCTCTTCTTCTCGCCCAAAGTGTCACTTCTTTTTTGGGTGGAAAAGAAACATGGAGAATCCGGGAAAGGATTACCAGCAATCAGAATACAATGACCCAGAAAACAATGAAGATGGGATCCGCCGAcggctgagagacagagacctTCTCAGGAAGAGGAGAGCAGAGGCGCAGGAGAAGGAGACATACCAGTGGGTTCATGGGGAGAAGAGCCGGAGGAAGAGGGAGCGACGGGAGAAGAGCGGCTCTGGCCGGAAAGGGAGGCCGAAGAAGGGGTTGCACGAGGAGCCAGAGCCGGCCCAGGAGGAGCCCCCACAAGAGGGGCAGCCAGGGGTGGAGGAAGACGTCACCCCGCTGCCCCCGTCCCAGGACCCACTCCAAGaactggaggagctgctgcccGGCCCCTCCAGCGTGGAAGTCACCTTCGAGGGGCCCAATGGCAGCCAGTCAGTGGAGGCATTCGTGATTGAAGACTTGGGGCCAGACGAGAAACAGGACTTGCCCCAAGCTGTGGAGAACCTGTCTGCTGCTCCAGAAGGAAGTCAGGAATTATCACAAGACTACCCTACACTGGAACAGGAATACTTCTCTGCTGGCTACATCTGAAAGCTCAGATCCCCTCCCTGATGTTTCTCCTCTTCAACTcgataaaaaagaaagagaagtcaTAGAATGCGTTGAGATATGAATGCTGAATGTTTTGGTATAAATACGCGTTTAACCAGATGTTTGAAATTAAGCTTtcgaaaatataaaataatataaatacatgttttcctgAAACCTATGGCATTTATAGGCCATGTTTTCCGTTAAGTGTATCAGTTGTACCACAATGtcctttttttaaactgttctatggttactttttattttacagcgtgacatgtttatttctggaaaataaatactgtttaataCAACAAGCAGTCTGTACAGTGTTTTCAAACTAAGCCTTATTAGGAATTTGCAGTGTTTCTTATGCATTACACTACTCTGCGTGTGAGATAGATGGGTCAACCACATTAGATAATTATGATCTATGTTATGAAGGAAAATTGAAGATTTACATTCTTTTAaacttgtataaataaaatgtgctttttggGGGTG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117670 lncRNA downstream 61907 29911982 ~ 29914837 (-) True G94337
TU117556 lncRNA downstream 689997 29286207 ~ 29286747 (-) True G94246
TU117522 lncRNA downstream 768940 29207470 ~ 29207804 (-) True G94218
TU117425 lncRNA downstream 1241000 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 1551501 28425032 ~ 28425243 (-) True G94074
TU117708 lncRNA upstream 12993 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 15098 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 15098 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA upstream 16617 29999873 ~ 30002282 (-) False G94359
TU117757 lncRNA upstream 125715 30108971 ~ 30109182 (-) True G94392
AMCG00017944 mRNA downstream 939 29971090 ~ 29975805 (-) True AMCG00017944
AMCG00017947 mRNA downstream 10118 29965499 ~ 29966626 (-) True AMCG00017947
AMCG00017939 mRNA downstream 392312 29577109 ~ 29584432 (-) True AMCG00017939
AMCG00017937 mRNA downstream 431839 29538155 ~ 29544905 (-) True AMCG00017937
AMCG00017938 mRNA downstream 449247 29525435 ~ 29527497 (-) True AMCG00017938
AMCG00017949 mRNA upstream 28054 30011310 ~ 30030524 (-) True AMCG00017949
AMCG00017955 mRNA upstream 129034 30112290 ~ 30112964 (-) True AMCG00017955
AMCG00017954 mRNA upstream 138609 30121865 ~ 30129314 (-) True AMCG00017954
AMCG00017963 mRNA upstream 448947 30432203 ~ 30439609 (-) True AMCG00017963
AMCG00017967 mRNA upstream 506220 30489476 ~ 30490828 (-) True AMCG00017967
TU117547 other downstream 703576 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 1100821 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1832155 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3866670 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3868939 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 644732 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2279520 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2288438 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 2310764 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 2471829 32455085 ~ 32456410 (-) True G94835

Expression Profile