RNA id: AMCG00017946


Basic Information

Item Value
RNA id AMCG00017946
length 696
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00017946
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29953467 ~ 29954534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGTGGTAAAAGTGGAGAAGGACTCTTCCTCCGATCGCTGCGACCTGACCACCTACCCGGCCTACGTGCATGAGCCGCCGGTCTTCGCGCCGGTGCAGGTGCCCCGCTCGGCCTATGCCAACTCCGTGTACCCCAGCGTGGCGGTGAACCCGCCGTACAGCCAGCAGATCGCACCCAACTACTACCCTTCGTCCTCCCCGGGTTTCAGCTCCAGCCAGCCGCGCATGTTCAGCATTAACACCCTCATTGGACACCACGGGGGTCTCTCCGGCGGGGCGGACCTCCTCCAGCAGCCCAGCCGCAGCTTTAGCCCGGACATGGCCTCCGCCGCCAGCTCCTGCAGCCTGGCCGGGACGGGCTATCAAGGCCAGTCGTGCGGAGGCGCCATGCTGTCCAGGTCGTCCAACCACATGTCCTTCCCTTACTCTGTGTCTAACGGACATCTGTCCATGAACCAGAGCTCCTACACCCAGGGGAACGGGCAGATCTATGGGACAGCGGGCCGACTGGCGATGCCCAGCTCTTCGCCCTCTGTGGCAAGTGACTCTATGGACCCCTATGGCAGGATGTCGCCGGGCCAGTTCACCACCTTGGCACAGTACAACAGCAATGGTCCCATCAGTGGCACAAATGCCTACCTGAGGCATGCTACCTATGCTGGCAACATGGACAGGTTTGTGTCTGCCATTTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003419 growth plate cartilage chondrocyte proliferation biological_process
GO:0060021 roof of mouth development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117632 lncRNA upstream 302393 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 376064 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 630122 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 642614 29307100 ~ 29310853 (+) True G94255
TU117555 lncRNA upstream 666722 29286193 ~ 29286745 (+) True G94245
TU117684 lncRNA downstream 23619 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 584434 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 631176 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 763644 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 872908 30827442 ~ 30831863 (+) True AMCG00017978
AMCG00017943 mRNA upstream 41289 29902815 ~ 29912178 (+) True AMCG00017943
AMCG00017942 mRNA upstream 120104 29806640 ~ 29833363 (+) True AMCG00017942
AMCG00017941 mRNA upstream 188767 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017940 mRNA upstream 196552 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017936 mRNA upstream 536654 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017948 mRNA downstream 36112 29990646 ~ 30002319 (+) True AMCG00017948
AMCG00017953 mRNA downstream 112143 30066677 ~ 30089697 (+) True AMCG00017953
AMCG00017951 mRNA downstream 136432 30090966 ~ 30106897 (+) True AMCG00017951
AMCG00017950 mRNA downstream 187687 30142221 ~ 30146091 (+) True AMCG00017950
AMCG00017952 mRNA downstream 194809 30149343 ~ 30176032 (+) True AMCG00017952
TU117593 other upstream 503120 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1309484 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5237846 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9131520 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9137921 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2452895 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2506764 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2553156 32507690 ~ 32601449 (+) True G94857

Expression Profile