RNA id: AMCG00017948


Basic Information

Item Value
RNA id AMCG00017948
length 1645
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00017948
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29990646 ~ 30002319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCTCCCTGTGTGCAGCAGCGCCATGCCCCTCGCCACAGCCGCCCGGTGACTCTGCATTGCCTGTTTAACTGCAGTGGGCGGCGGCGGCCGGCGGCGGCGCTATTGAGTATATATTCGCTTCAGTCCCATTTCCCTCCATGGTTTCTCCTCTGCCCGAGTAACTTGGCGTTTGGCTCACTTCATTATACAGTCCCATATTCTCCCTCCATTAGGGCATCTCTCTGCCTTTTGGACTGAAGCGAACACTTCCACCAAAACCCAAGAGGAGGCCAAAAACTAAACTTTTAAAGGGGAAGATGGACATGAAAAAGAGGATCCACTTAGAGCTGCGAAACAGGACGCCGTCTGATGTACGAGAGCTGGTCCTGGACAACTGTAGATCTAACGAGGGCAAAATCGAGGGGCTCACCGCAGAGTTCGTGAATCTCGAATTTCTCAGCTTGATAAATGTCGGCTTGATCTCCGTCTCCAACCTCCCTAAGCTTGGCAAGTTAAAAAAGcTGGAGCTCAGTGACAATAGAATTTCTGGTGGCCTCGACGTTTTAGCAGAAAAGCTGCCGAACCTCACACACCTGAACCTTAGTGGAAACAAACTGAAAGACATCAGCACGTTGGAGCCTTTGaaAAAGCTGGACAACCTGAAGAGCCTGGACCTGTTCAACTGCGAAGTGACGAACCTCAACGACTACCGAGAGAGCGTCTTCAAGCTCCTGCCGCAGCTCACCTACCTGGACGGCTACGACATCGAGGACCAGGAGGCCTCCGACTCCGACGGGGAGGTCGATGGCGACGGTGtggacgaggacgaggacgaaGAGGGCGAGGACGAGGAGGACGATGACCTCGAGGACGGGGAGGAGGAGGACTTCGACGAGGATGATGACgacgacgaggaggaggaggaggaggtagaAGGCGAGGAGGATGAAGACGAGGTcagtggagaggaggagGAGGAAGACGTTGGACAAGAAGGAGAGGTTGAAGAGGAAGACGACGACGATGACGAGGAGGAAGATGAAGACGACGAGGAGGGCGCCAAGGGCGAGAAGCGGAAGCGGGAGCCGGACGACGAGGACGACGAGGACGACGATTAAGACCAGgcgccccctccctccccacctccccTGCCTTTTATTCCTCCCTCTTTTCACCCACCCCTACCTTAAATGCGCTCCTGTAAAGGACTGGCGTATTGGATGGACTGACCTGGTGGAAGTGCGACGGCGGAACGATGTTTGAATCTCGAGAGCGAAGTTCCATTTTAGCATTCCACGATTTCTACTGTCACCCCCCAGTGTAAACCCAGCCGAGGACTTTGGGGACCAGTATCTAGTTTGGGTCAGtgcttttaataatttgttgGGGGgctcttagtttttttttttttttttttatataagttttttattttatttttgatggttggttttgtttttttggtcgttttttgtttttggtttgttttgtttttcctcagtaAGATCTTGCTATAGCAACAAAGAATGAAAAGGCTGTGATTGGCAGGCCGTGGTTTTCAAATGGCTGCCTGTTGCACAAATCAAGGTTGTAGCAACATTTTTACTTTctgtaagtttaaaaaaaaaaaaaaaaagaataaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 10004 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 339572 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 413243 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 667301 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 679793 29307100 ~ 29310853 (+) True G94255
TU117880 lncRNA downstream 536649 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 583391 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 715859 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 825123 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 1322205 31324524 ~ 31340832 (+) True G94583
AMCG00017946 mRNA upstream 36112 29953467 ~ 29954534 (+) True AMCG00017946
AMCG00017943 mRNA upstream 78468 29902815 ~ 29912178 (+) True AMCG00017943
AMCG00017942 mRNA upstream 157283 29806640 ~ 29833363 (+) True AMCG00017942
AMCG00017941 mRNA upstream 225946 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017940 mRNA upstream 233731 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017953 mRNA downstream 64358 30066677 ~ 30089697 (+) True AMCG00017953
AMCG00017951 mRNA downstream 88647 30090966 ~ 30106897 (+) True AMCG00017951
AMCG00017950 mRNA downstream 139902 30142221 ~ 30146091 (+) True AMCG00017950
AMCG00017952 mRNA downstream 147024 30149343 ~ 30176032 (+) True AMCG00017952
AMCG00017956 mRNA downstream 175312 30177631 ~ 30218286 (+) True AMCG00017956
TU117593 other upstream 540299 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1346663 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5275025 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9168699 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9175100 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2405110 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2458979 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2505371 32507690 ~ 32601449 (+) True G94857

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002059 False 1471 mRNA 0.45 7 NC_007112.7 26660369 ~ 26664840 (-)
grasscarp (Ctenopharyngodon idella) CI01000300_11031273_11033494.mRNA True 674 mRNA 0.42 3 CI01000300 11031250 ~ 11033794 (-)
rainbow trout (Oncorhynchus mykiss) TU2704333 True 2255 TUCP 0.43 6 NW_023493708.1 83176 ~ 89037 (+)