RNA id: AMCG00017949


Basic Information

Item Value
RNA id AMCG00017949
length 1757
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00017949
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30011310 ~ 30030524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctcacacacacacacacggagagACACAGGCTCAGACACAGCCAGCCTCAGAGCTCACAGGGTTGCCATTGCCATGCTGTGCAGCCACAGAGAGTGGAGGAAATCTTGCCCAGCGATCACAGAAGCGGGAGCTTGAGGACGGATCCACTTGGCTGTTTTTCTCGGCCTCGGGGACGCTTGGCAACCCAGGGTTTTGAAAGTTTTGCAGAAAATGATTGGGCATTGTTGAAACTTGGCTGTGGATTAGATTGCCGCCCACCCTTCCCTCCCAGCTTCTCTCGGCTCGTTTCAGTACACCTTGGTGCCGAAGACAGGATGACATGGCGCCCTCAGTACCGAAGCTCCAAATTCCGGCACGTGTTTGGCAAGCCCTCCACCAAAGAGAACTGCTACGATGGCGTGCCCATCACGAGAAGTGTCCATGACAACCATTTCTGTGCCGTCAACCCCCGCTTCATCGCTGTCATCACCGAGTGCGCCGGGGGAGGGGCTTTCCTCGTCGTTTCCCTCCACCATACGGGGAAGGTTGACCCTCATCACCCGCGTGTGTGCGGCCACAGGGGCAATGTGCTGGATGTCAAGTGGAACCCCTTCGATGACTTCTCGATCGCCTCCTGCTCAGAGGATTCAACGGTTAAAATCTGGGACATTCCTAAACATGGGATGGTGAAAAACATCACGGTTCCCAAGAAGGACCTGCAGGGCCACTCCCGAAGAGTGGGGCTCATTGAGTGGCATCCCACGGCCCGCAACGTGCTCTTCAGCACAGCCTACGACTACAAGATCATGATCTGGAACCTGGACACTCCAGATGCGGTCATTAAGAACCCCGTGAAGACCATTGGCCTCCACAGCGACCTGGTCCTCTCCATGTCCTTTAACACAGACGGCAGTCTGCTGGCCACGTCCTGCAAGGACAAGAAGATCAGGGTCATTGACCCCCGGACCACCACCCTCTTGCAGgacGACCTCTCCGTGCCTTTATTGGAAGAGGACCTGGACGGCTCCTCCGGGGTACTGTTCCCCTTCTACGATCCCGACACCCACATGCTGTACGTGGCGGGGAAGGGCGATGGCAATATCAGATACTATGAAATCAGCTCGGAGAAGCCATATGTGCAGTTCCTGGCAGAATACCGCTCGCACCTCCCTCAGAAAGGGCTGGGAACGATGCCAAAGAGAGGGCTGGACGTGTGCTCCTGCGAGGTGTTCAGGTTTTATAAGCTGGTGACAATCAAGAGCCTCATCGAACCCCTGTCCTTCATCGTGCCTCGGCGGTCGGAGTCGTACCAGGAGGACATCTACCCGATGACGGCCGGAAGTGAGCCCGCCATGACGGCCGACGAGTGGTTCAGAGGAGTGAGCAGAGGACCTATGCTGATGTCCTTGAAGCCCGGGAGTAAGATCTCCGAGTCGTGCCCCGCGCTGATGGCCACTGCGCCCCTGAGTTCGGAGCCCAAGCGCTATCAGAGCCGTCAGGGGCAGCAGGAGGTGGCCATCATCCAGGAGAGGCTGGAGACCAAAGAGCCCAAGGAGTCCAAAGCACTGAATGATTTTAAGGAGCGGCTGGAGGGCATTGACCTGGACAAGAGCCGGACTGGCGTGTCCAACGGCTGCGAGCCCCAGGCGTGCACCCCGCCCAAGACGGAGAATGAGATCCGCCGGCTGAGGGACCTCGTCAGTCAGAGGGACGTGCGGATAAAACAGCTGGAACTGGAGATCAAAAACGTGCGCAACTCCCAGGGAGCGTACTGA

Function

GO: NA

KEGG:

id description
K13887 CORO2; coronin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117710 lncRNA downstream 9028 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA downstream 9028 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA downstream 9028 29999873 ~ 30002282 (-) False G94359
TU117708 lncRNA downstream 13797 29996249 ~ 29997513 (-) True G94358
TU117670 lncRNA downstream 96473 29911982 ~ 29914837 (-) True G94337
TU117757 lncRNA upstream 78447 30108971 ~ 30109182 (-) True G94392
TU117858 lncRNA upstream 425674 30456198 ~ 30461173 (-) True G94483
TU117857 lncRNA upstream 429025 30459549 ~ 30460888 (-) True G94482
TU117908 lncRNA upstream 555205 30585729 ~ 30588789 (-) False AMCG00017972
TU117916 lncRNA upstream 580297 30610821 ~ 30614319 (-) True G94533
AMCG00017945 mRNA downstream 28054 29976744 ~ 29983256 (-) True AMCG00017945
AMCG00017944 mRNA downstream 35505 29971090 ~ 29975805 (-) True AMCG00017944
AMCG00017947 mRNA downstream 44684 29965499 ~ 29966626 (-) True AMCG00017947
AMCG00017939 mRNA downstream 426878 29577109 ~ 29584432 (-) True AMCG00017939
AMCG00017937 mRNA downstream 466405 29538155 ~ 29544905 (-) True AMCG00017937
AMCG00017955 mRNA upstream 81766 30112290 ~ 30112964 (-) True AMCG00017955
AMCG00017954 mRNA upstream 91341 30121865 ~ 30129314 (-) True AMCG00017954
AMCG00017963 mRNA upstream 401679 30432203 ~ 30439609 (-) True AMCG00017963
AMCG00017967 mRNA upstream 458952 30489476 ~ 30490828 (-) True AMCG00017967
AMCG00017966 mRNA upstream 460702 30491226 ~ 30514195 (-) True AMCG00017966
TU117547 other downstream 738142 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 1135387 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1866721 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3901236 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3903505 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 597464 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2232252 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2241170 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 2263496 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 2424561 32455085 ~ 32456410 (-) True G94835

Expression Profile