RNA id: AMCG00017955


Basic Information

Item Value
RNA id AMCG00017955
length 675
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00017955
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30112290 ~ 30112964 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgAACCTCGAAATTAAGAACATCTCCTTCAGTTCTGCTTCTGTCTCCTGGATGCCCAACCCTGCCACCTGCCCAACAAACCTGTACAGAATGATGTACCGTCCCAACTGGAACAGCATTCTGTCGGGCTTCTCCAGGAAGAACTTCCACCGCGAGGAGACGGTGCCCCTCGGCCGCAGCTCACTCACCCTGCAGAGGCTGACGCCAGCCACCAACTACATCCTCTGTGTGACCTGTCAGGGGTCCCAGCCCTCCAGCGACCAGTGCACCATCTTCCACACCCTGGCCAAGGACTCGGTGGTCCTCACCAGCAGGAACCTGGACCTGGCAACCGTGGTGTGGCTCACCAGCAGCATCCTGTTCATCATCACCACCGTGGTGCTGCTGCACGGCTGCTTCAAGCTGTGGTGCCGGAGGTGCAGGCGAAGTCACTACACCTCTGCCGAGACGGGCCACCACCGCGTGGGGAGCAGCCAGGCCTGGCAAGGAGGCCACGCTGAGACGGCCCTTGTGGACGAGCGCTGCAGCATCCCTACCCTGTCCAAAATGGACAAGCTGGCGGAGGAAAAACTGGAGTTCCTGCCTGAGAGACCTGTAGGCGGGGCGAATGGCCTGCTTGCCCAGAGCAGGCATAAAGACAAAATGGCCATCCTCCCGCAAGCTGTGTACGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117757 lncRNA downstream 3108 30108971 ~ 30109182 (-) True G94392
TU117710 lncRNA downstream 110008 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA downstream 110008 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA downstream 110008 29999873 ~ 30002282 (-) False G94359
TU117708 lncRNA downstream 114777 29996249 ~ 29997513 (-) True G94358
TU117858 lncRNA upstream 343234 30456198 ~ 30461173 (-) True G94483
TU117857 lncRNA upstream 346585 30459549 ~ 30460888 (-) True G94482
TU117908 lncRNA upstream 472765 30585729 ~ 30588789 (-) False AMCG00017972
TU117916 lncRNA upstream 497857 30610821 ~ 30614319 (-) True G94533
TU117953 lncRNA upstream 605388 30718352 ~ 30721502 (-) True G94563
AMCG00017949 mRNA downstream 81766 30011310 ~ 30030524 (-) True AMCG00017949
AMCG00017945 mRNA downstream 129034 29976744 ~ 29983256 (-) True AMCG00017945
AMCG00017944 mRNA downstream 136485 29971090 ~ 29975805 (-) True AMCG00017944
AMCG00017947 mRNA downstream 145664 29965499 ~ 29966626 (-) True AMCG00017947
AMCG00017939 mRNA downstream 527858 29577109 ~ 29584432 (-) True AMCG00017939
AMCG00017954 mRNA upstream 8901 30121865 ~ 30129314 (-) True AMCG00017954
AMCG00017963 mRNA upstream 319239 30432203 ~ 30439609 (-) True AMCG00017963
AMCG00017967 mRNA upstream 376512 30489476 ~ 30490828 (-) True AMCG00017967
AMCG00017966 mRNA upstream 378262 30491226 ~ 30514195 (-) True AMCG00017966
AMCG00017965 mRNA upstream 426004 30538968 ~ 30580996 (-) True AMCG00017965
TU117547 other downstream 839122 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 1236367 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1967701 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 4002216 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 4004485 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 515024 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2149812 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2158730 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 2181056 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 2342121 32455085 ~ 32456410 (-) True G94835

Expression Profile