RNA id: AMCG00017957


Basic Information

Item Value
RNA id AMCG00017957
length 507
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00017957
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30310065 ~ 30312005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTTAAAATGATGATCATTGTGGTTGTGACGTTTGCAATCTGCTGGCTTCCCTACCACATTTACTTCATCGTGACCGGAGTCAACCAACAACTGGTCCGTTGGAAATACATCCAACAGGTGTATCTCTCGGTCCTGTGGCTGGCTATGAGCTCCACCATGTACAACCCCATGATTTACTGCTGCCTTAATAGCAGGTTCAGGGCCGGATTCAAGCGGGCATTTCGTTGGTGCCCCTTCATCGAAGTCTCCAGCTTCGACGAGCTGCAGCTCAGGACCACGCGCTTCAATCCGACCCGCCAGAGCAGCATGTACACCGTGTCCAGGATCGAATCCAGCACGACTGTGGTCTTTGAGCCCAATGAGGGGGACAACCGGGACTCGGTGAGGAAGAAGAGATCTCCGTCCCGACACACAATCAACGGCTGCTCTAGCAACAGCACCAAAACCTCCCGGAGCTCCAGTTTCTACAGCACCACAAACACCTCGGTGGAGGACAACTCCTGA

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 329423 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 658991 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 732662 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 986720 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 999212 29307100 ~ 29310853 (+) True G94255
TU117880 lncRNA downstream 226963 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 273705 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 406173 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 515437 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 1012519 31324524 ~ 31340832 (+) True G94583
AMCG00017958 mRNA upstream 18708 30290759 ~ 30291357 (+) True AMCG00017958
AMCG00017956 mRNA upstream 91779 30177631 ~ 30218286 (+) True AMCG00017956
AMCG00017952 mRNA upstream 134033 30149343 ~ 30176032 (+) True AMCG00017952
AMCG00017950 mRNA upstream 163974 30142221 ~ 30146091 (+) True AMCG00017950
AMCG00017951 mRNA upstream 203168 30090966 ~ 30106897 (+) True AMCG00017951
AMCG00017962 mRNA downstream 89584 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017959 mRNA downstream 103756 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017961 mRNA downstream 144545 30456550 ~ 30459622 (+) True AMCG00017961
AMCG00017960 mRNA downstream 150859 30462864 ~ 30487284 (+) True AMCG00017960
AMCG00017964 mRNA downstream 208630 30520635 ~ 30537464 (+) True AMCG00017964
TU117593 other upstream 859718 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1666082 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5594444 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9488118 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9494519 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2095424 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2149293 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2195685 32507690 ~ 32601449 (+) True G94857

Expression Profile