RNA id: AMCG00017958


Basic Information

Item Value
RNA id AMCG00017958
length 334
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00017958
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30290759 ~ 30291357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACATGGCCATCATACACCCACTAAAGCCAAGACTGTCTGCAACAGCGACTAAAGTGGTGATACTGAGCATCTGGATCCTGGCGTTCATACTCGCCTTCCCGGTGTGCTTCTTCTCCACGACAAGACAGATCCCGGGAAGAATTCTGTGCTTTGTTCACTGGCCAAAAACTACTGATTCCTTCACCTATCATATCATTGTTACCATCTTGGTGTATCTTCTGCCCCTCGTGGTGATGGGCATTACCTACACAATAGTGGGCATCACTCTGTGGGGAGGAGAGATACCGGGAGACACCTCGGAGAATTACCACGAGCAGCTCAGAGCCAAGAGG

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 310117 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 639685 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 713356 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 967414 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 979906 29307100 ~ 29310853 (+) True G94255
TU117880 lncRNA downstream 247611 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 294353 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 426821 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 536085 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 1033167 31324524 ~ 31340832 (+) True G94583
AMCG00017956 mRNA upstream 72473 30177631 ~ 30218286 (+) True AMCG00017956
AMCG00017952 mRNA upstream 114727 30149343 ~ 30176032 (+) True AMCG00017952
AMCG00017950 mRNA upstream 144668 30142221 ~ 30146091 (+) True AMCG00017950
AMCG00017951 mRNA upstream 183862 30090966 ~ 30106897 (+) True AMCG00017951
AMCG00017953 mRNA upstream 201062 30066677 ~ 30089697 (+) True AMCG00017953
AMCG00017957 mRNA downstream 18708 30310065 ~ 30312005 (+) True AMCG00017957
AMCG00017962 mRNA downstream 110232 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017959 mRNA downstream 124404 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017961 mRNA downstream 165193 30456550 ~ 30459622 (+) True AMCG00017961
AMCG00017960 mRNA downstream 171507 30462864 ~ 30487284 (+) True AMCG00017960
TU117593 other upstream 840412 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1646776 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5575138 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9468812 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9475213 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2116072 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2169941 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2216333 32507690 ~ 32601449 (+) True G94857

Expression Profile