RNA id: AMCG00017960


Basic Information

Item Value
RNA id AMCG00017960
length 6991
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00017960
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30462864 ~ 30487284 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAAACTCGCCTGTTTTGCAATAATGCTCGGCACTCGAGAGAAGCCAGCGCAGTCAGCTGATCGGTCACATGACCTTTCTGTCAGAAGCAGGAAGTTGGCGCCGATGGAGGACAATCAGCCTTCAGTGCAGTCTTTCCAAAACTGAAACGTACCCTCCGTCACCGGACCCGCCCGAAGGCTTTACGGGATCCCCGTCTCTGCACAGCCGCCGACATGAGCTCCTCTGTCCGAGACGCGGCGGCGGCGCTGCTGGCGCTGGTGGCGGGCTTGTGCACCCTGCGGGCCGGCGGCCAGGGCTTTGAAACCCGGAGTCTGAGCGGGAAATGGACCCTGCGCAACGACAACGCGTCTCTGGCCGTCCCTGCGGACGTGCCCGGCTGTGTGCACACCGCTTTGCTGAAACAGGGGCTGATACAGGATCCATACTATAGGTTCAACGATTTGGTTTACAGATGGATCGCTTTGGACAACTGGACTTACACAAGGACGTTTTCTCTCCCCCTTGAATTCAGGCAAAGGCAAAAGATGGTTCTGGTGTGTGAAGGCCTGGACACGGTGGCTTCGGTTTCCATCAACGGCGCTGCTGTGGGTAACGCAGACAACATGTTTCGCAGATACAATTTCGATGTCAGCGCGCTGCTTCAGGAGAGCAATGTCATCGAGGTCAGATTCGTATCGGCCGTCGCGTAcgcagcgcagcgcagcacGGCCCACGCCTCCTACAAAGTCCCACCGGACTGCCCCCCTCCCGTGCAGAAAGGAGAGTGCCACGTCAACTTTATCAGAAAGGCACAGTCCTCCTTCAGCTGGGACTGGGGTCCTTCGTTCCCCACGCAAGGAATCTGGAGAGACCTAAGAGTCGAGGCCTACGACGTCTGCCGATTGGTCTATCTGAGCACGACCCCCAGCTTTGACCCCGTCGCTGGCCAGTGGCGCATCGAAGCAGAGTTGTTCTTCGACGCGGTGGAAGCGGCAGTGGCTCGCGTCACCCTACATATTCCCGAGTTGAAGACGCAAAACACCTTTGAGGCCAAACTTCAGCCTGGAATGAGTAGAAACGCATTCCTGCTTCCCGTTAACAGGAGTGTCCCTGTTAAGCTATGGTGGCCGAACGGACAGGGCAAGCAGACCGGGTACGAGCTGAGTGTCGGTGTGGAGGTGGGCGGGggatccacacacacacgcaccacGGTGTATTTTCGGACGGTGGAGCTGATCCAGGAGCCCATTGCGGGATCTCCAGGCCTGAGTTTCTATTTCAGGATCAACGGACGTCCTGTTTTCCTGAAGGGCTCCAACTGGATTCCTGCTGACTCATTCCAAGACAGAGTAACTTATGATGTCATCAAGAACCTCCTGCAGTCAGCCGTTGATGCCAATATGAACACACTTCGGGTCTGGGGGGGAGGCCTCTATGAGAGAGAGGAGTTTTATGACATCTGTGATGAGCTCGGGATCATGATCTGGCAAGACTTCATGTTTGCTTGTGCGCTTTACCCATCGGAGTCCAGCTTTTTAAACACAGTGAGAGAAGAAGTCACTCATCAAGTCAGGCGGTTGAAGTCCCATCCTTCCATCGTTGTATGGAGTGGTAACAATGAAAACGAGGCGGCCATCGCTACGGACTGGTTCCACATCCCCCCCGCAGAGCGAGAGGTTTACCGCAGAGACTATGTACAGCTCTATATCAACAACATCAGGGAGATTATTCTAAGAGAGGATAGCAGCCGTCCGTTTCTTAGCTCGAGCCCCACCAACGGAGAGGAGTCTGTGCAAGAGGGCTGGATAGCGGAGAATCCTTATAACCCGAATTACGGAGACACGCATTTCTACAGCTACGTGGATGACTGTTGGAACTGGAAAAACTTCCCCAGGACCAGGCTGGCGTCAGAGTACGGCTTCCAGTCGTGGCCGTCATTTTCCACCTTGCAGAAGGTGAAGTGTGGGGGTGTGGTCTCTGCTCCCAAGGACTGGCATTACTCCAGTGATTTCACAGCCCACCGGCAGCACCACCTCTCCGGCAACAAGCAGATGCTGTTTCAGGCCGGCCTGCACTTCTCCCTGCCAGTGTCTACTGACCCCCTGCAGGAGTATAAAGACACGCTGTTCCTCACACAGGTAACTGGACACCCTGATATTCATGATCACTTGAGCAGGAATTAACTTGTTGGATAATGTCTCCTGTTGTTTGCAAGGTGCAGACTTATTAAACGCCCACACAGGAGGTTTTTGTGTGAATGAAATTCTCCCCGTTGGACCAGATTATTTGGTCAAGTTATTTTAGATATTCCTGGCCCCGTTTCACTCTCTTCTTGCATAGATCCCAGtcattgatttgatttcttaaGTGAAGTGATTGTCTTTGCGTTTACTTTGAGCTTTGCGAACCACTTCAGTCATTATGTTCTTTGCAGGATCAacatacattcaattaattacaaacTAAGAACACCGTTCTACACTTAAAGTTGTGTTTTGGATCTTCACCTTGTTTAGATCTGGCAATAGACACAATCCGGGTGATTTACTtcattgtgatgtttttaatcCTGAactattctctctcttttgtaaCAATGGACAACACCAAACCTCTGAAAGGTCTCAATCGTTGTATTATATTTCATCACAGGTGCCCACATCCAGGGGTGGCCTGCAGttgttacaatacatacagctgcatttttttttactggtgaAATCTAGCTTGAGGGTCCAGCATCGGGGTCCCCCTCTCGGGATCGGACCCACGACCCTCCACTCCAATGTCCGGGGCCCTGACTGCTCCTCCACGCTGCCGCCcatcattttaaacacttaCAGCTCCGTGCTCATTCTCTTGTGCTCCTCTGTAGTAAATCCACGTGTGGAATAGTGAGGTCCTCAATGGCACGGGACAATCTGTCTATTTGGACACACTGTAGGACTGGCAGCTGTAATACATGCACAGCACAGGTAACCTATAGAAGCCATCGGCCATTCCAATACACATCCAATACGGCAAGGTGCTTCTGATATGGCATGTTCAGACGCCAGTGGCAGATACTGCAGCAGTGTTCAGAGCGTGTGCGCGGAGCAGCAGGACACAACTGTCTCTGGTTAACCTGCAGCACAACGCAGCACATTGTAAAGAAACCGCAGCGAAGTGTATAAATAGGGCATCTTACTAACAACAGCCTGTGTGCGTGCATCGTGTGTcatgtgtcctgtgtcctgcgtGTGTGCTTccgtgtgtcctgtgtgtgcgtgtcctgtgtcctatgtgtgtgtgcgtgcgtgcgtgtgtccTGTGTACAGGTGATGCAGGCGCAGTGCGTCAAGGCGCAGACGGAGTTCTATCGCAGGAGCCGCAGTGAGATCATCGAGGGGCGGGGCCACACCATGGGGGCCCTGTATTGGCAGCTGAACGACATCTGGCAGGGCCCGTCCTGGTCCTCCATCGGTGAGCACAGCGCCCCTCACGTGCACTGCTGGGGTCTGGGACAGGGAAACACGGCACGCTGCTGCGATTGAATCCCCTACCTGTTCCTATGTggcaggggtctcaaactcaattcctggagggccatgtATGCTGGTTGAGTCCTCGattacttaatttgtttaaatatatcaaattgaataattaattaaacaatatattgcgaggtattttacagttgatggtctaaaagtgcatttgattcgaGGTACAGTATCTTATAAAATATGCTGGtcctggataggtgtttaaatgtatctagcttattaaacaattagactAAGTCATTGAGGTctcggttggaacgaaaaccagcgtcatacacacggccctccatGGAcggagtttgagacccctgatGTATAGCCTTTCTGCCCTGCTTCTCCAGACTGTTTCTTCCTCTCCTGAAGCGAGTGCTGAGCGGTCTTTTCCCTGAACCCGTCCCGTTCTGCATATCGATACCAAGTGGATCAGCGCTTTCATTTGAATAGACATCTGTAATAATGTGAGTGGCAGGAGTGTGTGCTTTTACCTGGGATGGCGCTTCTACGTTTTTGGAGATATTTTTAGCAGAATAAACCCTACCAGTGGCTTTATGACGGTGTGAAATCTGGACCCGCTCTTGAGCTGAGCTCCAGTTAACCTCAATTAATCCAGCATTACTCTAATTAAAGGTTGGCCCTGCAGAGACCAAAGAAGGACCAAAGAAAGAATATATAACGTCATCATAATGAGGGGAACTATGTGAACCAAAAGTCAATATGCTTCCTTTGCAAGTTATCGtttctaattattattcagaattcacaatttccctttttattaGTTATACAGCTGTAACTATTTACCCTAGTTAACACTGATTGGTGTAAGAAAGCAAGTAATAACTCATTTTAACGGCTAATGATGTTATTCGTATGTTCCTTAAAGTAATGTAatctgagagcaattaaaatgtgttagcTGATCATGACAGCTGAGGGCCTGGTGTTTGTGGAGATTTTACCCACTGTCCATCAGGTGTCGCTGTTTCACAGATAATCTTCATCAGCGATCCAGAGCGCTTGCGTTACCCTGGCAGGATGTTGTAATGACGTTGTAGTGGCGGCATGATGTACACATGCTCATGCGTGTTAGAGAGAGCGATACCACCCAGATACATGTGCTGGCCTTCAGTGACTCAAATGACAGACATGCGAACGCAGCGATTGGTTCCATCTTACATTCTTAATTGTAGAAAAACGTTCATGCACTTTCTAACTTGCACTTACCTGCTGCACACCTTGATGCTCCTGACTATATCCGtgtcttttttcctctttaaattGCTCTGCTGTTGGCGACTGTGTGCTCTGACCTCACAGAGTGTGAGGCGTTTGCTTGCTCTCGCTGCCCTATGttgtatacatttcattttaattgattattatgTATTGGCTACATGGATGCAGATTATATAAAAAGTGTgtgaaacagttaaacaggtAGTGTGCTTGTTCAAAATCTTATTTTCTTGCACAACGAAAGGCTTTCCTTTTGGATAACTGTCAGGCATCGAGTTGCCAGAGCtgatggaaaaaatgtatttgaagatGTGAATTAGGATGGGAATGCTCACTTGCTAAAAGCACCAGTGAAGTGTGCGCACAAGATACCTGACCCCCACCGGCTTGTGCGTTTCTGTACAGAGTATGGGGGCAAGTGGAAAATGCTGCACTACTTTGCCCAGGACTTCTTTGCTCCTGTGCTGCTGGTGGGCTGCGAGGATGAGGAGGAGTTTCACATCTACGCTGTGTCAGACCTGCAGAGTAACCTGTCTGCGACGCTGCAGGTCAGCGTGTACCAGTGGAGCCGGATGGAGGCCGCCTCTACGCTGCTCTCTCCGGTGGAGGTCCGGTCCGCCTCTTCCCTCTTGGTTTTTAAGCGGCCCGTGCAGGACATGCTGGGGAAGGGGAACTGCACCCGAAAGAGCTGTTTCTTCACCTTCGCACTGGAGGCAGGACGGGAGCAGCACGGCCCAACAAACTACCACTTCCTGTCCTCCTTCAAGGACGCAGAGGGGCTGGAAAAGCCGAAACTTTCCGCCACTGTGGAGCAGCAGGGCGAGACGTACGTCATCATCCTTCAGACGTCTGCCATCACGCCCTTCGTGTGGCTGGATGCTGGGGACATCCCGGGCAGATTTGAGGCCAATGGCTTCCACATGCTGAACAAATGCAGGGCCGTGAAGTTCTACCCCTGGCGTCCCAGCAGCCGCGAGGAGCTGGCCCGGTCTCTGCAGGTGACGTCCCTCACGAGTCTGACCTGAGGCCCCGGCGCTCTGGACCACAGCGGACGCGTCTGATAGGCATCGGCGCAGTGTGCTGACTTGCAAGGAAGACGGATacaattcacttttatttttcacacgTCTGTTTGCACGTGACGCGTTTACTGAAAGCATTTAAttgcagatgacacaaaatCGCCAGCTCTTCCTGTGCAGGTGAAACAAGATGACGGCCCACGAGGTCGATGAAATCCAAATGTGAACGCTGgtgttaatttatgtaattcTGCTGGCAGCGGGGGAATAAGTAACCTTGCTGTGGAGGtcttattttaaactttcactgaaatgaaaataggAAAAAACAGATCACGAGAGGGTGACAACCCTGAGACGCGAAACTGTGGTTTTAGGACCAGGGTGGAAAAAATGATGCCGCAGGGTTTGATAGTGAGTTGTGGTTGAAGAGGTTTTCATTTTAGCGCCTGTGCCTAAATTGCAAAACGAAACCGAGTGCTGGCAGCTGGCCGCACCTGGTCATGTGACCATTATCAGAGCCAGCTGAACTTGCTCTGGGACAACGGGAGGCTGGGAGGGACTGTGCACACGCGTGTCCGGGGCCGGGGTCCGCCTTGACTTCCccatacagacacagactgactgTAGGGGGATAGAGAATATACAGTCACACATACATGTCAGAAAGGCAATAATCGCAGTCAAAggagcatttgtttttgttttcgttttcaccattttattataaaagtatTACAAACATACCAAttaaaaagccattaaaaaaaaaaattccacagcatttttttttctttccaaagccTATCTGTACAAGGAACCTGTGGAGttgcaaataaattaagtgCCACCTGCTGCTGTTTGAGAGTCGTGTTTGAGGTTTAGGTTGTTAAACACTCACTCATCTTCATGAAGTACCTCAAACAACGcatggggaaataaaaaacCTTGTGTTTGTATAGAAGCTCAATGTTAACTCAAGTAAAATATGCATAGACTTTGCATGGGGGGGGCAGTACTGTAATGGCCGGCACAGCGGAAGCCTAATCTGTCTTCCTAACTTAcagttaaatgcaaaaaaatgccTAGAATCTGTCCgtacaaaaaataacaagttGAACAGTTGAAGTCATACAAAGTACAAAGTTGTAACGTAGGAATAAAAGGACATCATttatgaaaatacttttttttttttttttt

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K01192 E3.2.1.25, MANBA, manB; beta-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 482222 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 811790 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 885461 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 1139519 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 1152011 29307100 ~ 29310853 (+) True G94255
TU117880 lncRNA downstream 51684 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 98426 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 230894 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 340158 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 837240 31324524 ~ 31340832 (+) True G94583
AMCG00017961 mRNA upstream 3242 30456550 ~ 30459622 (+) True AMCG00017961
AMCG00017959 mRNA upstream 33241 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017962 mRNA upstream 51376 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017957 mRNA upstream 150859 30310065 ~ 30312005 (+) True AMCG00017957
AMCG00017958 mRNA upstream 171507 30290759 ~ 30291357 (+) True AMCG00017958
AMCG00017964 mRNA downstream 33351 30520635 ~ 30537464 (+) True AMCG00017964
AMCG00017970 mRNA downstream 109712 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017969 mRNA downstream 123766 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017968 mRNA downstream 133539 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017973 mRNA downstream 168849 30656133 ~ 30656924 (+) True AMCG00017973
TU117593 other upstream 1012517 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1818881 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5747243 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9640917 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9647318 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1920145 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1974014 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2020406 32507690 ~ 32601449 (+) True G94857

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU165933 True 2336 lncRNA 0.36 2 CI01000028 1720025 ~ 1722574 (-)
striped catfish (Pangasianodon hypophthalmus) TU165933 True 1395 TUCP 0.48 2 NC_047602.1 28019256 ~ 28020674 (-)