RNA id: AMCG00017961



Basic Information


Item Value
RNA id AMCG00017961
length 2886
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00017961
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30456550 ~ 30459622 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGAAGATGCCTAGTGCGGTATTTCCACCACTTTGTATGATATGCGGCGTGCTTGTGTTCAGTGAATTGGTGATACTGGACGTCAGTGTCTCATCTTGTTAAACCTCATTCTTgttcataatttgttttgtttaactctTGCAAAATGAGTTCTAGTCTACGGTGTTTAACAGGAATGAAATGGCTGCTGTTCATCTGCACCCTGGATTCTGACAGTCTTTACCTTCTTTTCCAGGAGCTGAACGATTTGGCACGTGACCCACCAGCACAGTGTTCAGCGGGTCCAGTCGGGGATGACAtgtttcATTGGCAAGCCACAATCATGGGACCTAATGACAGTCCATATCAGGGTGGTGTTTTCTTCTTGACAATTCATTTTCCCACAGACTACCCCTTCAAACCACCTAAGGTAAGCAGCACAACCATTTGCACACACCTGATGTGTCCagttgatattttgaaattcatcACTTAGTCTGTGGTAGTAGTGCTCCGCTGTAATACTGCTCTAGCCTCCAGTGCTGCAATTACCGTCTGTTTAATGTATTCTAGATAATGCCAAGAGCAAACCTGAGCAAGAGACAGGGTTTTACCATGGGATCATGCTTTTGTagaattacttatttattcatgtattttaattaaaatgagccTGTAGTAAGAATTAGGGGCATCAGGATGAATTTTAACCATTGTGCAGTATCCATTCAGCTTGAGGGGCTGAAACCTGCAGGATAGAACATTTTCAGTGCAACACTAATTGCTCGATTGCATTTATATTAGTGTGGACATGCTTATTGGATGTAGCATATTAAGAGGGCAAATTATTTGGCATggggttgaataattttgcCCTGCATATAGTTGCAGAGGAAATCAGTTTTTTCAGCACTGATCTTTATGCACCcctgtatttttcatttgtttgttcctTCAACTTTGACTTTTCCCCCCCTGAATGTTTTTAAGAGAATTGTGTgctatgaaaataaaaggattgtttttattttccaggttGCATTTACCACAAGAATTTATCACCCAAATATTAACAGTAATGGCAGCATCTGCCTTGATATTCTAAGATCACAGTGGTCTCCTGCGTTAACTATTTCTAAAGGTAAGGGCTTTGTTTGGAAAGCCTTGATTTTTCTCTAAGCAAATATTAAATGTCTATGCATTGCTTTCTCAAAATTGCATCCTTCATAAATACCAGcaacaaaatacttttatgtAAGTAAATAACAGCCTTGGTATGTAAATGTGTGCGTTTAAATTGTTCCCAGGAGGGAAATGAATTGCCAAGCCTATGAATTTGACCGTTCACCTCAAAAGTAACAATATATCCACAGATagcagtaaaaatacaataactgttAATACAGGAGTGAAGAGAGCAGTAGCTGGTTTATTTCTTCTGGAAGTGTTTACCAAATTTGTGCTTTTATTgcttttgaatgtattaaatggCTACACTTAAACCGTGACGATTGCTTATTTGTGATGGTTTAATTTCCTGTGATTGTCTCGCTCTGCTGTATTCGGAAGGAAGGGGTTACAGTCAAAGTGGCTCCTGTGGTGTCATTCAGCATGCCCGATTTTAAAAGCGTTGATTTTTCTTGTGTACCTCCTGATGGAACAGGTTTTTAATGCTGAACTTCTTCTGTTACAGTTCTTTTGTCCATTTGTTCACTGTTATGTGATCCAAACCCAGATGACCCTCTAGTGCCAGAGATCGCACGCATCTACAAAACAGATAGGGAAAAGTGAGTATGCATCCACCGCCTGGGCCCTTCAATTCGTGCAGTTTCAATTGTCctacaaatgttaaaaactaACTAGTCTCAACTGCTAGATGTTGACGAGCATAAACACTTGATTCTCCAGGTAACGTGGCACCATTTTGCTTTATTAGGTATAATAGACTAGCGAGGGAATGGACAGAGAAATATGCAATGCTTTAGGGTAAGATCCCCGGCATCTTGGAGTGAGCAGGACCGTTTGCACTGAAGTGTTGCATGAGGACCACACTGCTGCTGTGAACTAACTAATGGAGCTGAGGCACTCTGGCCTGTGATGGATTAACTGCTTGGAGATGCAGGGTTGTGCTGTTTGTTTGATAAGGAGGCTTAAGCAAAAATCTATTTCAATATTGGTTTTGAGGAAACAGTGTAAAATCTCTTGTACGTTTCGAAGCACTGTACTCGTAGACATGTTCTGCCACCCTGAGTTCATCCCTTTTGTGTTCCCGATGttacaaattcagaaaaacCTGATGTGACAATTTGATTTCACTTCCCGATTGATCAGCAAATGTTATACATTTAGTGTGGTGTTCATGTTCCATGAGTATACGGTAACGGATTGTCCTTTGCACAAAGTAgcccaaccaaaacaaaacagacccTTTTCATGAAGATCGGAGATGCTGGCACAACTGTTCTCACAATTCAGTTTAGGGGCCGTGTGTCCTGATCAGCCACAGGCTTGCTGGTGTGTGCAAAGTGAACGAGTTGTCAGCAGGTCAGAGACTAAATATTTGTGTTAagtgttaaatgttaaacttttAGTTTTGGAATCTCAAAGGCATTGATGAAACCATAATGCACGGATATTTAGTTGCATATCAAAATGTTTAAGCTTATAACTAATTCAGAATCTGGAATTGCTCAGTTACGCTTTGTGATTTTAGACCTTTTAAAATGAGCCAGACCTCAGGACATCAGTGTCCTCATGACAGGGTGGGGTTGGGGTAACTGTGGTGTGTTGTGGCCGTGGGTTAATTTTACTTGTACTTAAGTTAAATGTAAGGATTGAGATGCTATAATACGAGCACTCGCTCATTCCACACCTCTTTCAGCCCTAAAAAAGCACAGAGGCCTGGTG

Function


GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 475908 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 805476 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 879147 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 1133205 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 1145697 29307100 ~ 29310853 (+) True G94255
TU117880 lncRNA downstream 79346 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 126088 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 258556 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 367820 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 864902 31324524 ~ 31340832 (+) True G94583
AMCG00017959 mRNA upstream 26927 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017962 mRNA upstream 45062 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017957 mRNA upstream 144545 30310065 ~ 30312005 (+) True AMCG00017957
AMCG00017958 mRNA upstream 165193 30290759 ~ 30291357 (+) True AMCG00017958
AMCG00017956 mRNA upstream 238264 30177631 ~ 30218286 (+) True AMCG00017956
AMCG00017960 mRNA downstream 3242 30462864 ~ 30487284 (+) True AMCG00017960
AMCG00017964 mRNA downstream 61013 30520635 ~ 30537464 (+) True AMCG00017964
AMCG00017970 mRNA downstream 137374 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017969 mRNA downstream 151428 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017968 mRNA downstream 161201 30620823 ~ 30631235 (+) True AMCG00017968
TU117593 other upstream 1006203 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1812567 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5740929 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9634603 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9641004 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1947807 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2001676 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2048068 32507690 ~ 32601449 (+) True G94857

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_02496792_02498535.mRNA True 419 mRNA 0.34 4 CI01000000 2496744 ~ 2498594 (+)