RNA id: AMCG00017964


Basic Information

Item Value
RNA id AMCG00017964
length 3462
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00017964
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30520635 ~ 30537464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTGTGCAGGGGTTACTGGTGCGCCACACAGAGAGCAGCGCAGCCAGTGTGCGTGTGGGTGCCCTGTCTACCGCCTGCCCGCTCTACAGCCGCACAGCAGTCAGTATGAGTGTGCGGCGCATTCAGCGCAGCTGCGGGTTGATCCGCGCAGTTGTGCTACTGGCGGCAGCAGTTCAGACTCTGAGAGCCACTGAGATGCATCCAAGTCACGGCTTTTTACAAGACATTTTCCAGGTCTACGGTGAAAATGGCACTTTGTGCATCGAGGACCTGCAGTCCTTATTGGAGACAATTGGAGGCAAGAGAAACCCAGACAACGTGGGAGTGCTGGACACATTTCATAACCTCCAGTGCTTGTCTGGCAAAGAAATATTATCTCTGCATGGGCTGACCAACGAGAGCCGTCTGACAGAAGTGGACTTCCAAAATATCTGTCCTGCGATCCTACAGCAAGCCGTCCTGCAGCCCTGCCCGATAAAAACCCCGGAGTCGAACCTCGTCAATACACTCAAACCCGTGCCTTACCAAGtATGGGGATATGGAGTCTTGTCTGTAACCATTATCAACCTGGCCTCCCTTCTGGGTCTGATTCTGGTGCCGTTCACGAAGAAACCTTATTTCCCGAAGGTGCTGACATACTTCATTGGACTGGCCATAGGGACCCTGTACTCTAACGCAGTCCTGCAGCTCATTCCTGAGGCCCTGGGTTTTGACCCTAAAAGAGATAATTATGTTCTCCAAGCCGTGGGAATATTTGGAGGATTCTATGTCCTTTTCttcatggaaaaaatattaaagattgCACTAAAAACTGAACATCAGCACAGCCACAGTCACTTCACCACACCAGAGGACGAGGAATGCCACCAGGAAGCAGAGAAAGGCGGAGCAAGTCCTGCTGCCAACGGGGAGCTGAGCCACAACACCCAGGTGATCACGGTCACCAGCTTCGGCTCCAGCAACGAGGTGAACATCGTGCCCGTGGACCACGAAGAGGATGTTCAGCTGTCCAGGGGATACTGTCGCTGGCTGCGGGGCCCCGGGATCGCCAACATTAAAACGGTGGCCTGGATGATTACCCTGAGCGATGCCGTCCACAACTTCATCGACGGCCTGGCCATCGGGGCATCCTTCACCGTGTCCATGTACAACGGGGTGAGCACGTCCATCGCCATCGTGTGCGAGGAGTTCCCCCACGAGCTGGGAGATTTTGTCATCCTGTTGAATGCAGGCATGAGTATCCCACAAGCGATGTTCTTCAATCTCTTATCTGCCTGCTCCTGTTACATCGGTCTTGTACTGGGTATCATTGTGGGCAGCAACTTCTCTCCCAACATCATCTTTGCCTTCGCTGGAGGGATGTTCCTGTATATAGCTTTGGCAGACATGTTCCCGGAGATGAACGACATCCTGAAACCTGAAGAAAGAACCACTAAGAACAATGTGGTGTTTTTCATCATTCAGAACGCTGGCTTATTAACCGGCTTCGCCATCATCCTGCTCATCACCATGTTTGCGGGGCAAATAAACTTCGGATAGAGCGCTGCGCCGCTGTCTAAAATCACAGGCTCTTAAACTGGGGAAGACGGGGAGAAGCAAAAATGATTCTGCTTGACAGTCACTGGTGCCAACTACTGTACTACTGCGAGGGGACGGGTGTTGTAGTTTTCACACCACCTGCCGTATTTGCTTGGAGGTGACGAGCCATCAccagaaatgtgatttttagATCTCTTAAAGGAGTTATTTATCGATGCCTCACTATTATTAGCTAGTATAGTTCACAGATAATTCTTACTCAGCTATCTCTAACTTTAcacatgtactgtatttaattcAAGCTGCTCTCCAGGGAAAGCCGTGGCAGTTTACTCCGCTCTCTGTGCTGGAATCCTGTGACACTTAGAAGTGCAAACATGGCCGCCTCGATCCGATCAATGTGCAATAGGTAGTACCAGGGTGCCTCCTTTgagataatacaaaaaatacaggaCACCAGCGTGGGGGGTTACTGACAAATTGTTGACTGGTGGGGGGGCTAAAGTCGTACACTGATTGTAACAAATTTTTaagaacatataaaaacatttccaaaaaacGGACGGGGTCAAAGTACGTAAGAAATACAAGATAGTTTGGTCAAACTCTAGGTGCTACTGGTGTGCATACTTTTTAATCATACCTTTTTAAAGAATGTTATATGgggacaaatgcattttaaaaataacttgttcTGCCGCAAAAAATCACAAAGAAGCCTAATGCAAAATTAAAGCCTATTCATATGGCCAGAATGAGGCCTTATCACCAATTGATGCTGAGAAAACCATACACATGAGGCATGAACCagttttgcaatgttttataaTCATTTCAATAGATTTGAACAGAttcctttctgttttaatgGGATAATTCAGACAATGTGAATGTTTGTTGTTATAATATCTTGCTGATGATTACTGTGATCAAAACAAATGGTTTTCCATCATCATATGTATgcctttaaatatgtatgtacactTTAAACTATAGCAATATAATTTTCAGGGTGTCACCACTAATGTGAGCTGAGATGTCAAGTGCAGTGTGAAGTTAAACTCCGTGAACCTGCTTTGACTTTTAATCCCAAAGAGCTGCAGGTCCAAAACTGTAAGACTCCaatggttatatttttttaaatatgcatatacaaATAACATATCATAGGACAAAGTTATGGTAACCACTGAAGATTTGTACTGGTATTGGTGTGTTACATGCATGCAGAGTATGTGATGCTTCCTAATAACTCCTGTTAGTGTAAGTGGAtttaacaaatgtatgaaatgtaCTGTTGAGCTTTTACAGTTGAAACTCAGGGTTCATTTTGTTaccaaatatgttttatgcaCTGCAGTCGTGAAAGGCAATGGAGAACATGgctgaatgaaatgcaatttcATACAATATTAGTTTCCTACCTGAAATGCGAGTCCTGTTATTAACCTTCCTAAATGTCACcacaatgattttttttattttaatggaatgcCAGAACAatgatctttttgttttttaaaaattcCAGAATGTTGGCCGAGGGCTTTTACTTCCACACAAACTTTCTCCTGCATTTTTGAGCAAGATTAATTTTCCTtgtgagcattttttttttttttttgagactTCCCGTTGTTTTCGCCCTTTCTGAGCCAAATCAGCTAAAGCCTCTTTCATCCAAAGGAGACTTTCAATCATCAAAACATATCAGATATTGTCGTAATGCAATCtcctgttattttgttattttgtaaatttaatgttttcagttttcgtTAAGACTTATTTGCCAATTTTAACTATTGCAATTAAAACAGGAACAGCAGGACCCAGCACAGGACTCACATTAATCCACACTGCTCAGCAATTTGATTGTATATGGTTATATTATGCGTTTAGTGACCAGATTTCAGAGCCA

Function

GO: NA

KEGG:

id description
K14714 SLC39A8, ZIP8; solute carrier family 39 (zinc transporter), member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 539993 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 869561 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 943232 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 1197290 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 1209782 29307100 ~ 29310853 (+) True G94255
TU117880 lncRNA downstream 1504 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 48246 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 180714 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 289978 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 787060 31324524 ~ 31340832 (+) True G94583
AMCG00017960 mRNA upstream 33351 30462864 ~ 30487284 (+) True AMCG00017960
AMCG00017961 mRNA upstream 61013 30456550 ~ 30459622 (+) True AMCG00017961
AMCG00017959 mRNA upstream 91012 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017962 mRNA upstream 109147 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017957 mRNA upstream 208630 30310065 ~ 30312005 (+) True AMCG00017957
AMCG00017970 mRNA downstream 59532 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017969 mRNA downstream 73586 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017968 mRNA downstream 83359 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017973 mRNA downstream 118669 30656133 ~ 30656924 (+) True AMCG00017973
AMCG00017978 mRNA downstream 282405 30819869 ~ 30831867 (+) False AMCG00017978
TU117593 other upstream 1070288 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1876652 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5805014 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9698688 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9705089 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1869965 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1923834 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 1970226 32507690 ~ 32601449 (+) True G94857

Expression Profile