RNA id: AMCG00017972


Basic Information

Item Value
RNA id AMCG00017972
length 6119
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00017972
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30585729 ~ 30596417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACACGTCACGGCGCCGGGGCTTGTTTTGCGTGTGCAGCGCCGGACTGCGCCGGTTCTGGGATCCCTCGTAATGCCAAGCCCGGGCTCGCCATCGCTTTCATCCGGCTAGACAGAGGGGACAGCCGGGGAAAGCTGGCGACACGTCCTCTATCCCTCAGCACGTCGACTCGAAGACGACCCGACCATGAGCTCAGATCGGCAGAGCGACAGCGAAGACGGCGAGGAGTCCCCGGTAGGCAGGCCCAGTCGTGGAGCTCCTGCGAGGAAAGGCccggaggaggaggatgatgCGGATGCACGGCGGCAGAGGAGGCACCAGCGAGCCTCCGGCCACAGGGACGGTTCCGAAACGGCGGCGGAGGAGCTCCCCTCGGACCCGGCGAGCGCTTCGTGCTCCAGGACGGTCGGGTTAACCACCAGCGGCGGGAATACCATATTCCGGTGGCTGCGGGAGAGGTGTCTGGGTAGGGGGGTGTTTGTGGACCCTGCTCGGGACAACTTCAGGACCATGACGAGCTTGTACAGCTCCATGAACCCGGCGGACTCCGTCAACCTGAGCACGAAGACGCACGGCGCCGTGTTCAACCTGGAGTATTCGCCCGATGGGTCTGTGCTCACTGTGGCTTGTGAGCAAACTGAAGTCCTCTTATTTGACCCGATATCCTCGCGGCACATCAAGACTTTGGTTGAGGCACACGAGGACTGTGTTAACAACATCAGGTTTCTGGATAACCGCCTCTTTGCCACCTGCTCAGATGACACCACCATCGCCCTCTGGGACCTGAGGAACCTCAACTCCAAAGTGTGCTCTCTGCACGGACACGCCAGCTGGGTTAAGAACATCGAGTACGACACCAACACCAGGCTGCTCGTCACGTCAGGGTTCGACGGCAACGTCATCACGTGGGACACGAACCGGTTCACGGAAGACGGCTGTCCGCACAAGAAGTTCTTTCACACCCGCTACCTGATGAGGATGCGTCTGACGCCGGACTGCTCCAAGATGCTCATTTCCACCTCGTCCGGGTATCTGCTGATCCTCCACGACCTCGACCTGACGCAGTCCCTGGACGTGGGGAGCTACCGCATCCTGAGGGCCAGGCGGACCACCTTGAGCTCAGATAACTCCACATCGGGTCAGCGATCCTCTGGCTCTCCTCGGCACAACGAATCCATCAAAATCCCCTCTCACGCTCAGAGGGAAGGAGCGTCTCCTCGAAACAGCCTGGAGGTGCTGACCCCTGAGATCCCGGGGGAGAGGGACCGGGGCAACTGCATCACCTCCCTGCAGCTGCACCCCAAGGGCTGGGCCACCCTCATCCGCTGCTCCAGCAACACGGACGACCAGGAGTGGACGTGTGTGTACGAGTTCCAGGAGGGCGGCCCCGTGCGGCCCGTGTCGCCCCGCTGCTCCCTGAAGCTCACCCACTACATCGAGGAGGCCAACGTGGGCCGGGGCTACATCAAGGAACTGTGCTTCAGCCCCGACGGGCGCCTCATCTGCTCGCCCTACGGCTACGGCATCCGGCTGATGGCCTTCGACGGGCAGTGCAGCGAGCTGGTGGACTGCCTGCCCAAGGAGTCCAGCTGCCTGCGCGAGATCCGCTCCATCTACTCGCACAGCGACGTGGTGCTCACCACCAAGTTCTCGCCCACGCACTGCCAGCTGGCCTCCGGGTGCCTTAGTGGACGGGTGTCCCTCTACCAGCCAAAGTTCTAGCCACTACTCGACCCTcccggacacacacacacacacacacacacacacgcatgtaaTTCCTCCCACCGCAAGAGGTAGATGCGTGCATCTGATTTGTTGACTCCCAGAGAGGTGCAAGAGGATATCATCTACCTTCAGAGGCCTCCCGGGAGCCCAGGAGCCGCCCCCAAAGGTTAATTAAAGAGTGTTTAAGCCCACAGAAGAGGGACAGAGCGGTAATCTCTGCGACTCAACTCTGGTGTACAGCTGCGGACTGGTACTCGTATTTGTCTACAGTAAATATATGctatttttgattgttttggtttgtttgtttgtttgtttgtttgtttcaaccTGTTCACCATCTTCTGTGGTACTTTGTGTATGTattcgttgtttttttttctggagaaTACAGAGAACCCTCATCCCTGCCTCTGTAGCTTTTGAGACTTTTTCTTTGTACACTACAGTGCAGTCATGTCCACAGCCAGAAGGAGGAAGATTAGAGACCGTTTGTTTAATCGGTCGTGCCCCTTGCAGATTTTCTTATCTCTGGCTTTCTGCAGGAATTCAGTTACTCCGTCCTTGCCGGTTGGGCtggctctcacacacacactaacacagagaGTCAGTTTACTATTGCAAATTCAATCCTAGTCTTTTACTTTCTTCTGTCCGTTTTCTAGTGTTCTTGTTATACAAACACAACGTTTAACAGACATGagctgttttacttttttgtcttttgcatgttttttttcttatgcatGAACTGGTCCAAGATTATTATATTCCATGAGACATTTTTATCCATGAAGGATTTGTAGAATTGAAGGTTTTCATGAACGATAAAGAGTGAATCTCCCCCTGAAGACGGTGAAACAGTAAAggttatttgaaatatttaaatactggtTTTGACATCCATGCCTTTACGGTTTCCGAGTTTGTCTTTGGCCAGGAACCACTATCGCAGATTCCTGGTGatttttgtgttggtttatACAATGTTTGAGTTGGCGTTTCAGGGTCAGTGTCCTGAGACCTTAATGAAGCACTGTCAGCATAGCATTTATTTTGGTTCTTTTATCTTCAGCTCAAAAGTTGACACACAAGGaggttttacacacacaagGCAATGCAAGATGTGTTTATTCTGGAACTATGCTTAGCATTGGCAGAATTCAAGTGGGGTCTCCCTTGCCTTGCTTACACATCGTTCAGGAGATTAGCAATCCCTGTCGTGAtcggggggggggtggcagtctgtttttgaaactgCATCAGTGTGACGGTGTCTGTGGAAATGGATCTGCGATGATGGGGATTGAACAAGGACAGCCCACACATGCTCAGTGGGGTTGAAGCCAGTGTTCGACCAAGCTAGGGTCCAGATGTCTGACCTGCAGTTTGCTAGTGTTAAGGTTCAAGGATAAACTGTTCGTATTTGCAAACTTGGGTCTGATGACAGATGCTCATCAATCCACCGTTTCCAGGATCatgtgttcctgtttttttgtcttcctgATTTGGAATCCTTGGTTCATGACGAGAAGGAGGACCTGAGATCCTTCAGTTGTCCATAGTGCTCTCTTCGGTGTAACGCCGGGGGACCGAGTTCAGCCCGAGTGGCGTCGGTGCCGCCGTAGCGCCGGGCAGAAAAGGTTCTTCTTGATCTGTTGTTCAACGGCTGATTCATGGCACAGTCCGGATCCAGTGTGATGCTCCTGGTTTATCCTCGAGCCAAAACGAACACAGACGCCACTGTGGGCAACACCAGCAATGCCCTTCACACCGGGCCGGGTACAGAAACACGAGCTAATACTGCAGCCTGTCTGCTGATACTGACAGAGATATCAGATGTATTATTATCCTCTTGCCCTTGTGGAATTGAGGGGGGGAGATGCAGGGAGGTGAAAACCTGTGGGAAATACTGgttgatgtagattttttttattacataaactAGGGTGCTAGCAGGTCATCGTGctgagaaaataattttaaactaGCGCTTCTGGACTTCAATAAAGCACCTCAAAACAGCTGCTTCAGTACAGCATCGGTGTTGTGCTCAGGTCAAAATAACACTTCATGATGGGCAAGCGAGAGCTGTTCAGTTCAGTGGTACTTTCGAGAGGAAGGAGGGGAGCTGTGTGTGGCCGTTACTCAGTCAATCTTTGGAGGCTGTTTTGCAGTGGGTGTTCGACTGTGTTCCTGCCCAGCGAGGTTAAAGGATTCTACATATCTCCTGTGTCCCCATTATCTCACTTCCTCGTCACTGTTCCATTGCATGTGTCTGTGATCTGCTGGTGGGTTTggcaggggagaggggaggaaatgtataatgtgcAGCATTGCTATGATCTATGGGtacaacaaaaaaggcaatatACCTCAGGAATGTGCTTTTGacatacaaatatgaaacatgCAACAAAGAGTACCAAGGTTTGCAACCAGCAATTAAGTCAATAATAGTGAAATTCAAGTCAActactataaaaaaacaaaaacggttGTCATTGCACagctttcatttttgtgtgtttaaaaagagCGACTGCAAAAGAGCCTCACCGACAGGTTTATTTAAAACCAACCTTGTCTAATCAAGCTTTAGCACTTCACAGGATTAAACAAAATGGATTGCAGACCATGTACCCTGAATGTTGAAGGCATATTGGCAAGTCTCTGTACAATTAGTGTGAAAAAACGGTATGTATCTAACTGTCTTTGCATGGTTGGACgaaaacattttgtgttgttgtgttgatgCCCTGGAAGataacttattttctttaagttCGTGATGGTGAAGTTtcaatattgctttatttaaatcaacCAAATACATCCAAGTTTGTCCCCTGAGGACACGTCCCAATCAGGTTTCTGAGAGGAGTGCTACAAGCAAAGCGATGGCCAACAACCACATCATCTGGTACAGGACCACGATGTACATGATCAGTCTTGCACTGATGGGACTGTGTCAAATCTAGACCAACTAGACTGAAACCTGTGTTTGTAGGAAAACATGAGGATGGTCACTGTCTTCCCTTCTGCTAATCCCAAACAACATGCTGCAGGCTAAAACTACTAAAACGTCTTCTAATTAATTTGTGGGATTATTTGTGTGACAAGAAGGCATCCTAACAGTTGGCAGTTTTCAAGTGAAGGGCAGTGTCTGCAAACTTTCAGACGTCTTGTTTCTTATTGTACTCAGGGTCAAGAGCAGGGAGTGAATGTTTCTGTGAAGAACACATCTGGTGATTCCCTAATCGGCTTGGCGTTATTTGAGTTCTTGGTTATTAGTATTTGCCCAAAAAATAGGTTCGGATCTGCAGTAGGCATTTAAAAGATGATGTATGCTAGGTTTCTGGATGcttcttttatttcattttgttttatttctagcAGGTGTATGGGGGCAGAGTTATTTGATATGGACTGTACCCGTCCCACAGTACATTGTCTTGGATCCAGACTGTCTCGCTGGCTTCAGTCCACACTGAATTGTGCACATCTTGTGTAGCACCTCTTTTCATCCCAGTTTGGGGATTTCAAGCTGTGATTGCTCCTGCTCGGctgtattattttcctttataacCTGTcctgttgattaaaaaaagagagagggaaccCCTTTTCAGAAATAAGACTGGTTTCCAAACGGTCTTCatttgagattaaaaaagaaagtaaagcgGGTCTGCGACGGAGGAATGTCGAACGTTGTGAACTGTTGAAGCTCGACGCAAGCTGGGGACCAGTGTGTTTCCTGCTGGCAGCggctaatgtttttgtttgtttgtttttgtacatgtcATGAGGTTTGTGGTTGACATGTCTCCACTGAAAAGCATATTTGTGTATGCTCAATGGGGCCAATATCTCCACTATAATCAATCTTTTCAAATAATCCCTTCATCTTTAAAAGGCAGACATGCAATTCACGGTGCTTGCTTTCCCCCCCATTTCATTAtgcgtgtgtgggtgtgtgtgttttctcaaaGTTGttaaaagacattttttttgcattttatgttgCGAATTCTTAAAAAGCTTCTAATGCTCCAGCTGAAACTGAAACGAGAAACCAGTCATTTGCGCAGCGTATATTACCTTCCTCTCTCACGGGTCATGTTCTGTATTTTGAGTTTACAATGTAAAGATGATCGTggttaacacattttaaatatattgctgGTAACTGTAATTAACCAGTGCACATTTGTAAAATTGATGAAGTCTCCCAATATATAAGAATTGTATCTTGACTAAACTgaagtaaataatgtattatgaaaCTTATTTTTATGATGCTCAAGTGTGCCTGTTTCTATTTAGTTACTGAAAGGCTTGTTTAGTGAACTGCCTCAGTGAGAATACAAAGGAAAAGTCACAGTac

Function

GO: NA

KEGG:

id description
K11802 DCAF10; DDB1- and CUL4-associated factor 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117858 lncRNA downstream 124567 30456198 ~ 30461173 (-) True G94483
TU117857 lncRNA downstream 124852 30459549 ~ 30460888 (-) True G94482
TU117757 lncRNA downstream 476558 30108971 ~ 30109182 (-) True G94392
TU117710 lncRNA downstream 583458 29998354 ~ 30002282 (-) False G94359
TU117916 lncRNA upstream 14404 30610821 ~ 30614319 (-) True G94533
TU117953 lncRNA upstream 121935 30718352 ~ 30721502 (-) True G94563
TU117968 lncRNA upstream 383478 30979895 ~ 30980552 (-) True G94577
TU117982 lncRNA upstream 782838 31379255 ~ 31380225 (-) True G94590
TU117983 lncRNA upstream 782838 31379255 ~ 31380225 (-) False G94590
AMCG00017965 mRNA downstream 4744 30538968 ~ 30580996 (-) True AMCG00017965
AMCG00017966 mRNA downstream 71545 30491226 ~ 30514195 (-) True AMCG00017966
AMCG00017967 mRNA downstream 94912 30489476 ~ 30490828 (-) True AMCG00017967
AMCG00017963 mRNA downstream 146131 30432203 ~ 30439609 (-) True AMCG00017963
AMCG00017954 mRNA downstream 456426 30121865 ~ 30129314 (-) True AMCG00017954
AMCG00017971 mRNA upstream 9096 30605513 ~ 30607128 (-) True AMCG00017971
AMCG00017977 mRNA upstream 62209 30658626 ~ 30722050 (-) True AMCG00017977
AMCG00017976 mRNA upstream 148554 30744971 ~ 30776441 (-) True AMCG00017976
AMCG00017974 mRNA upstream 213987 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017975 mRNA upstream 236376 30832793 ~ 30848229 (-) True AMCG00017975
TU117547 other downstream 1312572 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 1709817 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 2441151 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 4475666 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 4477935 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 31571 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 1666359 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 1675277 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 1697603 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 1858668 32455085 ~ 32456410 (-) True G94835

Expression Profile