RNA id: TU117908


Basic Information

Item Value
RNA id TU117908
length 3010
lncRNA type sense_over
GC content 0.42
exon number 2
gene id AMCG00017972
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30585729 ~ 30596417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAGCCAGTGTTCGACCAAGCTAGGGTCCAGATGTCTGACCTGCAGTTTGCTAGTGTTAAGGTTCAAGGATAAACTGTTCGTATTTGCAAACTTGGGTCTGATGACAGATGCTCATCAATCCACCGTTTCCAGGATCatgtgttcctgtttttttgtcttcctgATTTGGAATCCTTGGTTCATGACGAGAAGGAGGACCTGAGATCCTTCAGTTGTCCATAGTGCTCTCTTCGGTGTAACGCCGGGGGACCGAGTTCAGCCCGAGTGGCGTCGGTGCCGCCGTAGCGCCGGGCAGAAAAGGTTCTTCTTGATCTGTTGTTCAACGGCTGATTCATGGCACAGTCCGGATCCAGTGTGATGCTCCTGGTTTATCCTCGAGCCAAAACGAACACAGACGCCACTGTGGGCAACACCAGCAATGCCCTTCACACCGGGCCGGGTACAGAAACACGAGCTAATACTGCAGCCTGTCTGCTGATACTGACAGAGATATCAGATGTATTATTATCCTCTTGCCCTTGTGGAATTGAGGGGGGGAGATGCAGGGAGGTGAAAACCTGTGGGAAATACTGgttgatgtagattttttttattacataaactAGGGTGCTAGCAGGTCATCGTGctgagaaaataattttaaactaGCGCTTCTGGACTTCAATAAAGCACCTCAAAACAGCTGCTTCAGTACAGCATCGGTGTTGTGCTCAGGTCAAAATAACACTTCATGATGGGCAAGCGAGAGCTGTTCAGTTCAGTGGTACTTTCGAGAGGAAGGAGGGGAGCTGTGTGTGGCCGTTACTCAGTCAATCTTTGGAGGCTGTTTTGCAGTGGGTGTTCGACTGTGTTCCTGCCCAGCGAGGTTAAAGGATTCTACATATCTCCTGTGTCCCCATTATCTCACTTCCTCGTCACTGTTCCATTGCATGTGTCTGTGATCTGCTGGTGGGTTTggcaggggagaggggaggaaatgtataatgtgcAGCATTGCTATGATCTATGGGtacaacaaaaaaggcaatatACCTCAGGAATGTGCTTTTGacatacaaatatgaaacatgCAACAAAGAGTACCAAGGTTTGCAACCAGCAATTAAGTCAATAATAGTGAAATTCAAGTCAActactataaaaaaacaaaaacggttGTCATTGCACagctttcatttttgtgtgtttaaaaagagCGACTGCAAAAGAGCCTCACCGACAGGTTTATTTAAAACCAACCTTGTCTAATCAAGCTTTAGCACTTCACAGGATTAAACAAAATGGATTGCAGACCATGTACCCTGAATGTTGAAGGCATATTGGCAAGTCTCTGTACAATTAGTGTGAAAAAACGGTATGTATCTAACTGTCTTTGCATGGTTGGACgaaaacattttgtgttgttgtgttgatgCCCTGGAAGataacttattttctttaagttCGTGATGGTGAAGTTtcaatattgctttatttaaatcaacCAAATACATCCAAGTTTGTCCCCTGAGGACACGTCCCAATCAGGTTTCTGAGAGGAGTGCTACAAGCAAAGCGATGGCCAACAACCACATCATCTGGTACAGGACCACGATGTACATGATCAGTCTTGCACTGATGGGACTGTGTCAAATCTAGACCAACTAGACTGAAACCTGTGTTTGTAGGAAAACATGAGGATGGTCACTGTCTTCCCTTCTGCTAATCCCAAACAACATGCTGCAGGCTAAAACTACTAAAACGTCTTCTAATTAATTTGTGGGATTATTTGTGTGACAAGAAGGCATCCTAACAGTTGGCAGTTTTCAAGTGAAGGGCAGTGTCTGCAAACTTTCAGACGTCTTGTTTCTTATTGTACTCAGGGTCAAGAGCAGGGAGTGAATGTTTCTGTGAAGAACACATCTGGTGATTCCCTAATCGGCTTGGCGTTATTTGAGTTCTTGGTTATTAGTATTTGCCCAAAAAATAGGTTCGGATCTGCAGTAGGCATTTAAAAGATGATGTATGCTAGGTTTCTGGATGcttcttttatttcattttgttttatttctagcAGGTGTATGGGGGCAGAGTTATTTGATATGGACTGTACCCGTCCCACAGTACATTGTCTTGGATCCAGACTGTCTCGCTGGCTTCAGTCCACACTGAATTGTGCACATCTTGTGTAGCACCTCTTTTCATCCCAGTTTGGGGATTTCAAGCTGTGATTGCTCCTGCTCGGctgtattattttcctttataacCTGTcctgttgattaaaaaaagagagagggaaccCCTTTTCAGAAATAAGACTGGTTTCCAAACGGTCTTCatttgagattaaaaaagaaagtaaagcgGGTCTGCGACCAGTGTGTTTCCTGCTGGCAGCggctaatgtttttgtttgtttgtttttgtacatgtcATGAGGTTTGTGGTTGACATGTCTCCACTGAAAAGCATATTTGTGTATGCTCAATGGGGCCAATATCTCCACTATAATCAATCTTTTCAAATAATCCCTTCATCTTTAAAAGGCAGACATGCAATTCACGGTGCTTGCTTTCCCCCCCATTTCATTAtgcgtgtgtgggtgtgtgtgttttctcaaaGTTGttaaaagacattttttttgcattttatgttgCGAATTCTTAAAAAGCTTCTAATGCTCCAGCTGAAACTGAAACGAGAAACCAGTCATTTGCGCAGCGTATATTACCTTCCTCTCTCACGGGTCATGTTCTGTATTTTGAGTTTACAATGTAAAGATGATCGTggttaacacattttaaatatattgctgGTAACTGTAATTAACCAGTGCACATTTGTAAAATTGATGAAGTCTCCCAATATATAAGAATTGTATCTTGACTAAACTgaagtaaataatgtattatgaaaCTTATTTTTATGATGCTCAAGTGTGCCTGTTTCTATTTAGTTACTGAAAGGCTTGTTTAGTGAACTGCCTCAGTGAGAATACAAAGGAAAAGTCACAGTacaatttactaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117858 lncRNA downstream 124556 30456198 ~ 30461173 (-) True G94483
TU117857 lncRNA downstream 124841 30459549 ~ 30460888 (-) True G94482
TU117757 lncRNA downstream 476547 30108971 ~ 30109182 (-) True G94392
TU117710 lncRNA downstream 583447 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA downstream 583447 29998354 ~ 30002282 (-) True G94359
TU117916 lncRNA upstream 22032 30610821 ~ 30614319 (-) True G94533
TU117953 lncRNA upstream 129563 30718352 ~ 30721502 (-) True G94563
TU117968 lncRNA upstream 391106 30979895 ~ 30980552 (-) True G94577
TU117982 lncRNA upstream 790466 31379255 ~ 31380225 (-) True G94590
TU117983 lncRNA upstream 790466 31379255 ~ 31380225 (-) False G94590
AMCG00017965 mRNA downstream 4733 30538968 ~ 30580996 (-) True AMCG00017965
AMCG00017966 mRNA downstream 71534 30491226 ~ 30514195 (-) True AMCG00017966
AMCG00017967 mRNA downstream 94901 30489476 ~ 30490828 (-) True AMCG00017967
AMCG00017963 mRNA downstream 146120 30432203 ~ 30439609 (-) True AMCG00017963
AMCG00017954 mRNA downstream 456415 30121865 ~ 30129314 (-) True AMCG00017954
AMCG00017971 mRNA upstream 16724 30605513 ~ 30607128 (-) True AMCG00017971
AMCG00017977 mRNA upstream 69837 30658626 ~ 30722050 (-) True AMCG00017977
AMCG00017976 mRNA upstream 156182 30744971 ~ 30776441 (-) True AMCG00017976
AMCG00017974 mRNA upstream 221615 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017975 mRNA upstream 244004 30832793 ~ 30848229 (-) True AMCG00017975
TU117547 other downstream 1312561 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 1709806 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 2441140 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 4475655 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 4477924 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 39199 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 1673987 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 1682905 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 1705231 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 1866296 32455085 ~ 32456410 (-) True G94835

Expression Profile