RNA id: TU117957


Basic Information

Item Value
RNA id TU117957
length 1971
lncRNA type sense_over
GC content 0.47
exon number 5
gene id AMCG00017978
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30819869 ~ 30831867 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaataagccAGCATAGACACACTGTATCCATTTACACAGATGAAACAGTGACTTACACACTACAAGAGTTAAGCATAGTTTACGTTGTGAAGCTGTAGACGCTCAACAAAGCAATTGTGAAGCGATTTTGTGGGGGGcaacaacaccaacaccacAGCAAGCAGCACgtctttgttgtcattttttcgTCCCTTGCTCGAAAAAGTGGTAGTTCAGCCAAGCCTGAATAAATACTGCTGGTGTCCGGCCGGGAGCTGGGGATCGGGGAGAGAGACGGGGCATCGACCGCGGATCTGCCCCACGGCGATGGAGGTGGAGAGCGCGTTTGTGTCGGCCGTCAATGGCGCGCCGCAGCCCGCTTCGTGGGACAGCCCCGCCGCGCTGCCGGGCAAGAGGAAGAGGGGCAGCGCTCCGGGGGACGGCTGCGTGTGCGGGCCGGGGGACAGCCACAGGCGGGACACGACCGGGACACACCGTGAGTGCATGACCCAGATGCGTGACGGGCGGTCGGTGTGCTCAGATACAGCGCTGGACTCTGTAAGCCGTGTGTAGGACGTTCACGGGGGGCTGGGCACCCCTCTATGTCAATGCAAGTGTTTTCTGAGCTACACAGGGAGTTCCTTTATATCGATTCCCGCAAACAGAGGCGTGTATTACTCCGAGTGCTGGAAACCAAATGGAAGCACGCTGTACCTGCCGGTGACCAACAGCCTCCTGGTCAACATGGAGAAGTACGACCAGGTCAGCTTCGAGGAGGGCTTCTTCTTCATAGGGGACAAGTCCGGAGGATTCCTGCAGAAGGAGCAAGGTCAAGCAATCCACTGCTGGCGCTACAGTGACCAGGAGAAGAAGCTCTTCATAGCGCTGTCCTATTTCTTTGTTAATGTCTATATGTTCCAGGAGGTCATGAACGCTCTCGGCGGGCTGTGAGAACACGGCAGCGCGACTCCCGCCGAGTGCCACGATTTTCCCCGACACCAAAGTGATTGTCCGCGAtcaagacaaaactgaaacaaacctCGATTATAGTCTGGTGCAGAGGTCTAATGGGATTTGAGTGACTGGGGTAGATGACAACCTACACTCTTAACGAGGTTTTTGCACAATTTCTTTGTAAGAAGTTGTCTGCTTCTGAGGCATTCCTTGATATTAGTTCACTGGCCAGAGATTGTTTTTGTATCGGTTTAGTGAATTCTACAATCCTCTGTCGTTTCAGGGAGACATTCCTAATATTTTGTCTCTTAGTATTGTGCTTTGGATTTGGATTTACTTAATGCTACTGTAATGCGTTGCGAGAAGCAGTGCAGGCCGCTGCATTATAATCTGACCTGTATTTTAGTTCCCTCTTTGTTTAAATCCAGTTGACCTTCATTTATTCACCTAAATCCACGAGTCGCTCTCTCAGTGGACTGTAACCTTAGAGCTAGTGACTGCTCAGACTCCAGGGTGTAATGTGGATGGCATTGCGGTGTGATGCATAGACCTCAGTTCTGTCAGTATATTTCTTGCTgtggtattttgtattttgaatatgaCTTTAAGGTGtacaactgtgtttttttttctttgagggTTAAAAGTGTTCTTAGATTTTGTCAGGgtgttgtatttgtgtgagACTCATTTCCCACTGTATTGCTTTAGCAAACAATATATCCATAGTAAAGATGAGTTAAGATGTGAAATCCTCTCACTGGAGCGATGTAACTACACTGTAGAGCAGGGATTAGATATGATTAATGGAGGAAATGGTCAGAAATACACTCCCGTTGTACCATTGGGAGGAGAGGGAAAATGCACCAGTCATTCACAGTGTAGCGGTTTTATGGTAAATAGTTTTACTTTGCATCACAACTGTTAATGTATTGAAACTATGTAAGTATTGCACATGTATTGTGGTCATCTTGTATAtgctttgtaatgttttttatgaggatacattttaaaaataaaatacaaactttgtGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117945 lncRNA upstream 105124 30718178 ~ 30722318 (+) True G94555
TU117900 lncRNA upstream 236266 30585710 ~ 30591176 (+) True G94522
TU117880 lncRNA upstream 282888 30538968 ~ 30544554 (+) True G94505
TU117684 lncRNA upstream 846800 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 1176368 29650790 ~ 29651074 (+) True G94310
TU117975 lncRNA downstream 492661 31324524 ~ 31340832 (+) True G94583
TU117984 lncRNA downstream 563283 31395146 ~ 31395366 (+) True G94591
TU117987 lncRNA downstream 585986 31417849 ~ 31418120 (+) True G94594
TU117992 lncRNA downstream 684965 31516828 ~ 31517029 (+) True G94599
TU117996 lncRNA downstream 767897 31599760 ~ 31603112 (+) True G94601
AMCG00017973 mRNA upstream 170518 30656133 ~ 30656924 (+) True AMCG00017973
AMCG00017968 mRNA upstream 196207 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017969 mRNA upstream 213108 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017970 mRNA upstream 223199 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017964 mRNA upstream 289978 30520635 ~ 30537464 (+) True AMCG00017964
AMCG00017980 mRNA downstream 777355 31609218 ~ 31621106 (+) True AMCG00017980
AMCG00017982 mRNA downstream 813962 31645825 ~ 31649592 (+) True AMCG00017982
AMCG00017981 mRNA downstream 828038 31659901 ~ 31675037 (+) True AMCG00017981
AMCG00017985 mRNA downstream 908705 31740568 ~ 31745981 (+) True AMCG00017985
AMCG00017989 mRNA downstream 1283298 32115161 ~ 32123373 (+) True AMCG00017989
TU117593 other upstream 1377095 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 2183459 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 6111821 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 10005495 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 10011896 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1575566 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1629435 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 1675827 32507690 ~ 32601449 (+) True G94857

Expression Profile