RNA id: AMCG00017984


Basic Information

Item Value
RNA id AMCG00017984
length 3195
RNA type mRNA
GC content 0.56
exon number 22
gene id AMCG00017984
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31622945 ~ 31644198 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCGGAGGCCATGCGAGCGGCGGGGGAGGTGATAAAATGCAAGGCTGCTGTGGCTTGGGAGATTGGGAAGCCATTGTCCATCGAGGAGGTGGAAGTGGCTCCCCCGAAGGACAACGAAGTCCGCATTAAGGTGGCAGCCACTGGAGTTTGTCACAGTGACTTAACCTACCTTTATGAGAGAAGCACCAAACCTTTCCCTCTGATTCTGGGACACGAAGGAGCAGGAACCGTGGAGAGCGTCGGACCCGGAGTGACCAGGTTTGCACCCGAGTACACGGTTGTTGGCGACGTCTCGGTGACCAAGATTCGGAGCGATGCCCCGCTGGATAAGGTGTGCCTGCTGGGCTGCGGCATTCCCACCGGGTATGGCGCTGCGCTCAACACTGCCAAGGTCGAGCCCGGCTCCACCTGTGCGGTGTTTGGGCTCGGTGCCGTGGGTCTGGCCACCGTGATGGGCTGCAAAACAGCCGGAGCCTCTCGGATCATTGCGGTGGACATCAACAAAGACAAGTTCGAGAAGGCCAAGGTGTTCGGAGCCACCGACTTCGTCAACCCGAAGGACCACAGCAGACCCATCCAGGAGGTGCTGATTGAGATGACTAAGGGAGGGGTGGACTTCTCCTTTGAGTGCGTGGGCAGCGTGGCTGTCATGAGATCTGCGCTGGAGTCTTGTCGTAAAGGCTGGGGAACCAGTGTGATTATCGGCTGGAATGAGCACCACGAGATCTCTGCCCCGTCTCTTCAGCTTTTACTCGGCCGGACCTGGAAGGGCACTTATTTTGGAGGCTGGAAGAGTGTGGACAGTGTGCCCAAGCTGGTGAACGACTATATGGAAAAGAAGATCATGCTGGATGAGTTTGTGAGCCACACACTGCCCTTGGACAGAGTGAATGAGGCTTTCGATCTCATGACCAGTGGGAAAAGATCCTCTTTGCAGGTTATTAAGTGCAAGGCTGCCGTAGCCTGGGAAGCTAACAAGCCTTTAACCATCGAAGAGATTGAGGTGGCACCACCAGAAGCTCATGAAGTTCGCATTAAGATCATTGCAACTGGAGTGTGTCACACTGACCTGTACTTCCTGTatgagggaaagaaaaaggaggGGTTCCCAGCAGTTCTGGGACACGAAGGAGCTGGGATTGTGGAGAGCGTGGGGGCAGGAGTGACCAAATTCAAGCCAGGAGACAAGGTCATCCCTCTGTTTGTCTCCCAGTGCAGAGAATGCAAGTTCTGCCTCAGTCCCAAAACCAATCTGTGTGAGAAGAGCTGGTCTGCTGAGCGGTACCGTGAGATGTCTGATCTCACCACTAGATTCACCTGCAAAGGCAAACCGATCCTGCAGTTCATGGGCACCAGCACCTTCTCCGAGTACACCGTGGTTAAAGAAATCGCTGTGACCAAGATCAGCGACGCCGCCCCACTCGACAAGGTCTGCTTGTTGGGCTGTGGCATCTCCACGGGCTACGGAGCTGCAATTAACACGGCCAAGGTCGAGCCCGGCTCCACCTGTGCGGTGTTTGGGCTCGGTGCCGTGGGTCTGGCCACCGTGATGGGCTGCAAAACAGCCGGAGCCTCTCGGATCATTGCGGTGGACATCAACAAAGACAAGTTCGAGAAGGCCAAGGTGTTCGGAGCCACCGACTTCGTCAACCCGAAGGACCACAGCAGACCCATCCAGGAGGTGCTGATTGAGATGACTAAGGGAGGGGTGGACTTCTCCTTTGAGTGCGTGGGCAACGTGGCTGTCATGAGGAGCGCCCTTGAGTCATGTATTAAAGGCTGGGGAGTCAGTGTCCTGGTGGGATGGACCGACCTTCATGACTTCTCTGCCCGGCCAATTCAGCTGATTTCTGGGCGCACTTGGAAGGGAACTTTTTTTGGAGGCTGGAAGGGTGTGGACAGTGTGCCCAAGCTGGTGAACGACTACATGCAAAAGAAGATCATGCTGGATGAGTTTGTGACCCACACAATGCCCTTGGACAGAGTGAATGAGGCTTTCGATCTCATGACCAATGGGAAAAGGCAGTGGTGTGAGCTGTTCTGCTGTGATTGGGAGAGGGGCTCCGCTGGCTCCGTCCCCTGGTACAGCAGACCCTCTCAAGTGATTAAATGCAAGGCAGCTGTTGCCTGGGAGGCTGGCAAACCCTTGTCCATCGAGGAGGTGGAGGTGGCTCCACCCAAGGCTAATGAAATCCGCATTAAGCTGTCAGCCACCGGAGTGTGTCACACCGATGCCTACACTCTGAGTGGAGCGGATCCTGAAGGGCTCTTCCCTGTGATTCTGGGGCATGAGGGTGCCGGCGTTGTGGAGAGCGTTGGAGAAGGAGTGACCAAGTTCAAACCAGgaGACAAGGTCATCCCTCTGTACATTCCCCAGTGTGGAGAATGCAAGTTCTGTAAAAACCCCAAGACCAATCTGTGTCAGAAGATCAGGATCACTCAGGGTCAGGGTTTGATGCCCGACAAAACCTCCAGATTCACCTGCAAAGGCAAGCAGCTGTTCCACTTCATGGGCACCAGCACCTTCTCCGAGTACACCGTTGTTGCCGATATCTCTGTGGCCAAGGTGGACGACTCTGCCCCTTTGGACAAGGTGTGCCTGCTGGGCTGTGGCATTTCCACTGGGTATGGCGCGGCGCTCAACACTGCCAAGGTCGAGCCCGGCTCCACCTGCGCCGTGTTTGGGCTCGGTGCCGTGGGTCTGGCCGTGGTGATGGGCTGCAAGGCTGCCGGAGCCACTCGAATCATCGGGGTGGACATCAACAAAGACAAGTTTGAGAAGGCCAAGGAATTTGGCGCCACCGAGTTTTTCAACCCCAAGGACCACAGCAGGCCCATCCAGGAGGTGCTGGTGGAGATGACCGATGGAGGGGTGGACTACTCCTTCGAGTGCATTGGCAATGTGGCCATCATGAGGTCGGCTCTGGAGGCGTGCCACAAGGGCTGGGGAACCAGCGTCATTATCGGAGTGGCGGCGTCGGGACAAGAGATTTCCACACGCCCGTTTCAGCTGGTGACAGGACGGACGTGGAAGGGAACTGCCTTTGGAGGCTGGAAGAGTGTGGAGAGCGTGCCCAAGCTGGTGAATGATTACATGGCAAAGAAACTGAAGGTGGATGAGTTTGTCACCCACACCCTACAGCTTGACCAAGTCAATGAGGCTTTCGACCTCATGCACGCTGGAAAAAGGTAA

Function

GO:

id name namespace
GO:0006069 ethanol oxidation biological_process
GO:0008270 zinc ion binding molecular_function
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity molecular_function

KEGG:

id description
K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118024 lncRNA downstream 567 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 105909 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 164691 31457879 ~ 31458254 (-) True G94598
TU117982 lncRNA downstream 242720 31379255 ~ 31380225 (-) True G94590
TU117983 lncRNA downstream 242720 31379255 ~ 31380225 (-) False G94590
TU118061 lncRNA upstream 97026 31741224 ~ 31741659 (-) True G94655
TU118071 lncRNA upstream 184261 31828459 ~ 31828800 (-) True G94665
TU118171 lncRNA upstream 547985 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 701052 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 1011832 32656030 ~ 32661641 (-) True AMCG00018020
AMCG00017983 mRNA downstream 15246 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017979 mRNA downstream 640042 30981050 ~ 30982903 (-) True AMCG00017979
AMCG00017975 mRNA downstream 774716 30832793 ~ 30848229 (-) True AMCG00017975
AMCG00017974 mRNA downstream 811610 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017976 mRNA downstream 846504 30744971 ~ 30776441 (-) True AMCG00017976
AMCG00017986 mRNA upstream 48129 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017987 mRNA upstream 218531 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017988 mRNA upstream 248275 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017991 mRNA upstream 443949 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017992 mRNA upstream 478932 32123130 ~ 32140451 (-) True AMCG00017992
TU117930 other downstream 964452 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2349777 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 2747022 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3478356 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5512871 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 618578 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 627496 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 649822 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 810887 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 958720 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015812 True 1325 mRNA 0.52 9 NC_007125.7 43590816 ~ 43602968 (-)