RNA id: AMCG00017986


Basic Information

Item Value
RNA id AMCG00017986
length 3666
RNA type mRNA
GC content 0.64
exon number 18
gene id AMCG00017986
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31692327 ~ 31715433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTACCTGGACACAGAGGAGCCGCTACATCCTGGTGACGCTCAGggATATACGGAACAACTTAATTAACCACATCGAGCCGGGTGCTTTTGTGGGCCTGCTGGCGCTGAAGCGACTtgaccTATCAAACAACAGGATCGGCTGCCTCAACGTGGACATCTTCAAAGGCCTCTCGAATCTCATCCGCCTAAACCTTTCAGGCAATATGTTTTCGTCTTTGTCGCAAGGAATCTTCGACGGCCTTGACTCTCTGAAGACACTGGAGATCCAGACGCCGTACCTGCTCTGCGACTGCAACCTGCGCTGGCTCATCTCGTGGGTGAAGGAGAAGGGGGTGGGCGTGCGAGACTCCAAGTGTGCCTACCCCCGCTCCCTGCAGGGCGAGACGCTCGGCGCCATCAAGGCCGAGAACCTCACGTGCGACGCGCCCCTGGAGCTGCCGTCCTTCCAGATGACCCCGTCCCACGGCCAGATCGTGTTCAAGGGCGACAGCCTCCCGTTCCAGTGCCTGGCCTCCTACGTCGACAAAGGCATGCAGGTGCTGTGGTACCAGGACGGGAAGATGGTGGAGCCCGACGCCTCCCAGGGCATCGTCATCGAGAAGAGCACGGTGCAGAACTGCTCGCACATCGCCAGtgCCCTGACCATCTCAAACATCCAGCTCGGCTCGACGGGGAGCTGGGAGTGCCGTGTGCGGACGAGCCGCGGCAACAACACGCGGACGGTCAACATCATGGTGCTGGAGAGCTCGGACAAGCACTGCCCCCCCGACCGCGTGACCAACAACAAGGGGGACTTCAGGTGGCCTCGCACCCTGGCGGGCATCATCGCGTACCTGCCCTGCATCCGCTACCCCGCCGGCACGGGCATCTACCCCGGCTCCTCCCCCGATGACCGCGGGGCGTGGCGCCGGTGTGACCGGGCCGGGCTTTGGGCAGAAGAAGACTACTCCAGGTGCCAGTACGCAAACGATGTCACCCGTGTCCTGTACATCATCAACCAGATGCCTCTGAACCTGACAAACGCAGTGACCACCGCCCAGCAGCTGCTGGCCTACACCGTGGATGCCGCCAACTTCTCTGACAAGATGGATGTAATCTTCGTGGCCCAGATGATTGAGAAGTTTGGGAAATTTGCAGAGAATAACCTGATGCTGGCGGACGAGAGGGTGCTGTGGATGGCTCAGCGCGAGTCCAGGGCCTGCTCCCGCATCGTTGAGTGTCTGCAGAGGATCGCCGGCTACAGGCTGGCCAGCGGGGGACCGGTCTACTCCACGCACTCTCCGAACATCGCCCTGGAGGCCTACGTGATCAAGGCCAGTACGTTCAACGGGATGACCTGCACTGTCTTCCAGAAGATCACACCGGACCGCTCTGGCCCGGGGGATTACAGCAGGAGGGACCCCGACCTGAACCTGAACAGACACCTCAGCTTCAAGTGCAACGTGACCAGCACGCTGTCCAGCCTGGCCCTCAAGAACACCATTGTGGAGGCGTCCATCCAGCTGCCCGCCAGCCTGTTCTCTCAGTCCAACGCCGGCCAGAAGGACGATGGCACCTACAAGTTGCAGCTCCTGGCCTTCAGGAACGGGAAGCTGTTCCCGGCCACAGGAAACTCCACGGTCCTGGCGGACGACGGCAAGAGGAGGAGTGTGGCGACGCCGGTCATCCTCGCCAAGATCGATGGGCACAGTCTGAGGAACCTACGCACCCCGGTCAATGCCTCCCTACGGCGCTTCGCCCATGGCACGGACGCAGTGGCGGCCTGCTGGAACTTCGGGCTGCTGAACGGGCAGGGCGGCTGGGAGAGCGACGGCTGCCGCGTCCTCTACGCCGACGACAACTTCACCACCGTCTCGTGCAACTCGGTCAACAGCTATGCCGTGCTCATGGACTTGAAGGCAGTGGAGCATTTTGCGTCCTCTGTCGAGCTGCTCCACCCCGTCACCTACGCCACGGCCGTCGTCCTGTTGCTGTGCCTGATGACCGTCATCGTCAGCTACATTTACCATCACAGCTCTGTCCGGATCAGCCGCAAGTGTTGGCACATGCTGGTGAACCTGTGCCTGCACGTGTTCCTGAGCTGCGTGGTGTTCGTCGGGGGCATCAGTCAGACCCGCAGCGCCAGCATCTGCCAGGCGGTGGGCATCGTCCTGCACTACGCCTCGCTGGCCACGGTGCTGTGGGTGGGCGTGACGGCGCGCAACATCTTCAAGCAGGTGACCAGGAAGGCGAAGCGCTGCGAGGACATTGACGAgccgcccccgcccccccggccCATGCTCAGgttTTACCTGATCGGTGGGGGAATCCCGGTCATCGTCTGTGGCATCACCGCTGCCGCCAATATCAAGAACTACGGAAGCCAAGCCAATGCCCCATAcTGCTGGATGGCGTGGGAGCCCAGCCTGGGGGCATTTTACGGACCGGTGGCCTTCATCGTCTTCGTTGATTGCATGTACTTCCTCAGCATCTTTGTCCAGCTGAGGCGGCACCCCGAGCGGCGCTATGAGTTGAAGGAGCTGCCGgaggaagagcagcagcagcagctggcgGGCGGCGAGTGCGCCGAGGCCCTCCCCCACGACGCCACCGCCGCCTCCCAGGGCCGCTACTCCGCCGTGTCCCTGTCGGCGCTGGAGAACGAGCACACCTTCCCCGCGCAGCTGCTGGGCGCTGCACTCACCCTGCTCCTGTTCGCGGCGCTGTGGGTGTTTGGGGCGCTGTCCGTCTCCCAGGACCACCCGGCCGACCTGGTCTTCAGCTGCCTGTTCGGGCTGGCGGCACTGGGCCTGGGGGCCTTCCTGGTGGTGCACCACTGCGTGAACCGGGAGGACATGCGGCGCTACTGGATCTCCGCCTGCTGCCCCGGAAGGACCGCCTACTCCATGCAGGTCAACGCTCCCCCAGGGTCCGGCGCCGGCAGCGGAGACGCCCCCAAGTGCACCAACAGCAGCGCCGAGTCGTCCGGCACCAACAAGTCCGCCTCCAGCTTGAAGCTCTCGTCACAGGGCTGCAAGCTCACCAACCTGCAGGCCGAGGCGGCACAGTGCAAGCCTACCCCCACGGCGGCGGCACCCAGCAACGGGGTGGCGGCGCAGCTGGAGAACAGCCTGACCGAGCACTCTCTGGACACCGAGATCAAGATGCACGTGGCCCCTGTGGAGGTGCAGTTCCGGCCCAACGGGCATGCGGGCCGGCACCACAAGAACAGGACCCGAGCGCACCGCGCCAGCCGGCTGACCGTGCTCCGGGAGTATGCGTATGACGTGCCCACCAGCGTGGAGGGCAGCGTGCAGAACGGCCTCCACAAGAGCCACCACGCCCGGCACCGCAGGGCCGCTTACCTGGCCTACCGCGAGCGGCACCAGAGCCAGGGCCCGCCGGACAGCAGCGACGCCAGCACTGCAGCGCCCCGGCACCGCAGGAGCCTGCTGGACAAGGGCGGGGGCGGCACTGGTGGTGGGGCGGTGTCCAGCGCCAGCAAGGATAGCGGGAAGCCGCCCATCGTGGTGGAACTCGAGAGCCAACCCAAGTCCTACGGGCTGAACCTGGCCAGTCAGAACGGGCTGCTCAAGGACAGCGGACAGACGGTGCCGCTGCTCAGTCCAGAGAGCACGGGCAATATCAGGACGGGCTTGTGGAAACATGAAACTACTGTGTAG

Function

GO: NA

KEGG:

id description
K08462 ADGRA3, GPR125; adhesion G protein-coupled receptor A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118024 lncRNA downstream 69949 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 175291 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 234073 31457879 ~ 31458254 (-) True G94598
TU117982 lncRNA downstream 312102 31379255 ~ 31380225 (-) True G94590
TU118061 lncRNA upstream 25791 31741224 ~ 31741659 (-) True G94655
TU118071 lncRNA upstream 113026 31828459 ~ 31828800 (-) True G94665
TU118171 lncRNA upstream 476750 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 629817 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 940597 32656030 ~ 32661641 (-) True AMCG00018020
AMCG00017984 mRNA downstream 48129 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017983 mRNA downstream 84628 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017979 mRNA downstream 709424 30981050 ~ 30982903 (-) True AMCG00017979
AMCG00017975 mRNA downstream 844098 30832793 ~ 30848229 (-) True AMCG00017975
AMCG00017974 mRNA downstream 880992 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017987 mRNA upstream 147296 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017988 mRNA upstream 177040 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017991 mRNA upstream 372714 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017992 mRNA upstream 407697 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017990 mRNA upstream 428383 32143816 ~ 32151676 (-) True AMCG00017990
TU117930 other downstream 1033834 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2419159 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 2816404 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3547738 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5582253 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 547343 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 556261 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 578587 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 739652 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 887485 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile