RNA id: AMCG00017987


Basic Information

Item Value
RNA id AMCG00017987
length 2604
RNA type mRNA
GC content 0.63
exon number 15
gene id AMCG00017987
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31862729 ~ 31883678 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGTGTGCATCGCCGCCACGCTGACGCAGCTGCTGCCCTGCTCTCGCGCGGCCTCTGCGTTTCTGGTTGCCTTCCCTAATCAAGGTCGTCAGCTGAACGAGGGAGtttggtACGAGTCCCCCACAGAGAACGCACTAATGTTCTTCAGCCGAGAGTTTCCTGCAAAGCATCTTGTTAACAAGCAGAAGATAGATGAGGAAAATGAGGCGAACTTGCTGGCCGTTCTCACCGAGACCCTGGACAGCATCCCGGTGGACGAGGACGGACTGCCTTCGTTTGAGGCGCTGGCCGATGGAGACGAGGCCAGTGCCAGCGACCACAGCTGCCCGTCCACCCCTGATGGCTCTCCGCCCACCCCCGAGGCCGAGGAGCCTTCTCTACTGAAGAAGCTCTTGCTGGCTCCGGCGAACTCCCAGCTCAGTTATAATCAATACACAGGTGGCAAGGTGCAAAATCATGCACCAAGTAATCACAGGATCAGACCGACGCCTGCTGTTGTCAAGACAGAAAACCCTTCTTGGAATAGCAAGCAGAGGAGTCCCTGTCCGCAGCAGCAGCCGCCGAAGCCGGCGAGGCGTCCGTGCGCTGAGCTGCTCAAGTACCTAACGGGCAGCGATGAGACGCTCCCGACCAAAGCCAGCGAGCCGAAAAGCAGCAGTGGCGTCGGCGGGGGCAGAAGTAGCAGCAGTAAAGACAAAACTGGCAGCGGCGCGGCCTGTTCGGCGTCTTCCTCCTCCaccttttcctcctcctcctcctcctcctccacctctccGGCCTCTAAGAAGAAGCCAGAGCTGCCGCCTCATCACCAGCGAGCCAAACCAACTACCTTGCCACTCCCCCTGACCCCCGAGTCTCCAAATGACCCCAAGGGATCTCCATTTGAGAACAAAGCCATTGAACGCACACTGAGCGTGGAGCTCTCGGGGACAGCAGGTCTGACACCACCTACCACTCCTCCACACAAGGCCAATCAAGAAAACCCTTTCAAACCCTCCGTCAAACCCAAGTTGTCTTCATGTACCTCGGCTGCCCTGTCAAACAAGAGACCGCGCTACGGCGACTCTCCCGCTTGCCGCCTGGCCCCTGGACCCGTGAAGAAGGGCCCCGAGCAGACGGAGCTGTACGCGCAGCTCAGCAAGCTCAGCAAGGTGTCGGCACCGCCAGCGGGGGGGCAGGAGGACCGCCGGGGCAAGCGGCCCACTCCGCGGCTGTTCGGCGACCACGACTACTGCCAGTCGGCGAGCGCTAAGAGAGACGCTGCCCCGGCTCGCCCGGCCGTGGATTCACAGGAGGGGAGGCGGCAGGATTGTAGGGACTCgacctcctcgtcctcctcttcctcctccacgGTGCAGCGTCAGAGCTGCGCCAGGGCCGAGCAGGACGTGTGGCTGGGCAGGGAGGCCGGGCAGCAGCAGGCCAAGAAGCAGGACAGCGGCGGCCCCTCAAACGGCAGGAAACCCCTCCGAGACCAAGAGATCCGGGCGGAGCTCAACAAGCACTTCGGACCCCCCAAACGGGCCATCTACAGCGAGGGCGAGACGGCGGACCCCCAGCCCCGCGAGGAGAGCGACTCCGGTGACGAGCTCTACTGCCCGCTGCCCGGCTACACGCACGCCAGCCTGCCCCTCGACGGGGTCTTCGACGACAGCGAGGACGAGAGCGAGAAGTTCCTGTACCCCTGGGAGGGCACGCACCTGGACCTGCTGTTCGAAGGCTCCCCATCCTCCTCGCCCTCCAGCTGCTCCCCTTCGCGCGGCTCCGTCTCGCCCCCCAAGTCCCTGTTCTCCTCCCAGCGGTTCTACTGGCCCCGGTCAGCGTCCCGCTCCCGCTCCCACTCTCGCACGGACGCCCACCGCCGGAGACGGTCCTACTCCAGGTCTCCCTACTCCCGCTCCAGGTCCAGGTCCCCCTACAGCCGCTCCTCCTCACGGTCCCGTCACGGCGCAGACTCCAGCGGCAGCCGGCCTCGCGCTCACAGAAGCCCCCATTCCCACTCCCGATCGCACTCCGGCTCGCCCTTCAGCCGTCGCCCAAGGTACGACAGCTACGAGGAGTACCAGCATGAGCGGCTCAAGAGGGAGGAGTACCGCCGGGACTACGAGAAGCGCGAGTTCGAGCGAGCCgagcagagggagagacagcGGCAGAAGGCCATTGAGGAGAGACGCGTGGTGTACGTGGGGAGACTGTGGGCCGACATGACCCGGGCGGAGCTGAAGAGGCGCTTTGAAGTGTTCGGTGAAATCGAGGAGTGCGCCGTCAATCTGAGAGACGATGGGGACAATTTCGGCTTCATCACGTACCGCTACACATGTGACGCCTGCGCCGCCTTGGAGAACGGACACACCTTGCGCCGGTCCAACGAGCCGCAGTTCGAGCTGTGCTTCGGCGGACGAAAGCAGTTCTGCAAATCAAATTACACAGACTTGGCTTGCTGCGGGAAGCCCAGCGCAGCCTGCGGAGGTAACGAGACGCGGCCGGGAGCTGCCACTGATGAGAGGGATTCACAATACCTCATGGATGTTTCTGTCCTTCGACTACAAGACTATCAGGAGTTTCTACACTCTGCGTATGATGAAGTAAATACATAG

Function

GO: NA

KEGG:

id description
K07202 PPARGC1A, PGC1A; alpha peroxisome proliferator-activated receptor gamma coactivator 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 33929 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 121070 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 240351 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 345693 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 404475 31457879 ~ 31458254 (-) True G94598
TU118171 lncRNA upstream 308505 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 461572 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 772352 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 906101 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 964588 32848266 ~ 32848466 (-) True G94936
AMCG00017986 mRNA downstream 147296 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017984 mRNA downstream 218531 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017983 mRNA downstream 255030 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017979 mRNA downstream 879826 30981050 ~ 30982903 (-) True AMCG00017979
AMCG00017975 mRNA downstream 1014500 30832793 ~ 30848229 (-) True AMCG00017975
AMCG00017988 mRNA upstream 8795 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017991 mRNA upstream 204469 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017992 mRNA upstream 239452 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017990 mRNA upstream 260138 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017993 mRNA upstream 272093 32155771 ~ 32163981 (-) True AMCG00017993
TU117930 other downstream 1204236 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2589561 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 2986806 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3718140 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5752655 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 379098 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 388016 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 410342 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 571407 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 719240 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile