RNA id: AMCG00017988



Basic Information


Item Value
RNA id AMCG00017988
length 330
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00017988
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31892473 ~ 31894806 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACATCGCACACAATCCTGGAATCTGTGTGTCCCTCCACCGCAGCTCGGCGAAGCCGTGCGCGGCCCTGGTGGGAGCAGACCAGCCCCTGTGCCCCGACCTCCCTGAGCTCGACCTCTCTGAGCTGGACGTCAGTGACCTGGACGCCGATAGCTTTCTGGGCGGACTCAAATGGTACAGCGACCAATCGGAGATCATTTCCAATCAGTACGGCAGCGAGTCCGCCAACCTGTTCGAGGGCCAGCCATCGTGGGTCACTGCCGCAGGTTATCTGATCGCAAAAGACAGACGGGGCAGTGGGATTAATGAATTACCAGATCTTGCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 63673 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 150814 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 270095 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 375437 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 434219 31457879 ~ 31458254 (-) True G94598
TU118171 lncRNA upstream 297377 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 450444 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 761224 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 894973 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 953460 32848266 ~ 32848466 (-) True G94936
AMCG00017987 mRNA downstream 8795 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017986 mRNA downstream 177040 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017984 mRNA downstream 248275 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017983 mRNA downstream 284774 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017979 mRNA downstream 909570 30981050 ~ 30982903 (-) True AMCG00017979
AMCG00017991 mRNA upstream 193341 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017992 mRNA upstream 228324 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017990 mRNA upstream 249010 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017993 mRNA upstream 260965 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017994 mRNA upstream 269257 32164063 ~ 32173862 (-) True AMCG00017994
TU117930 other downstream 1233980 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2619305 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3016550 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3747884 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5782399 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 367970 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 376888 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 399214 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 560279 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 708112 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile