RNA id: AMCG00017989


Basic Information

Item Value
RNA id AMCG00017989
length 7318
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00017989
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32115161 ~ 32123373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGACCcatcacacaaaacacacttcactaattcattcatattataatgattgtgtacagaatcaaaacaaaacagcagaaaaacagtCACAATAGACATCAAATCTGTCATCAATATAACAGATCATTGATCATTAAACCGGGAATTTAGGCGAGTCATGTGCCGGGACGGGGGCAGTCCTGCTGTGGCGAAAGAGGGACGCAGCTGCGTAAGCGGCGCCGCTGCTCCGCCTGAGCGACACTGCGCAGAACTGCTGCCTGCGGCCGGACGGCGAGATCCGCTGCGCTGCCAGacaTCCTCTCTCCAGGCCTGTAGAAACACGGCTCAGAAGATGTTATCATTAAATTGGCTGCTGGTGTTGGCGCTCCTCTCGGCGCCGGAGTCCCTGTGTGTCGAGATCTCTGGCAGGGAGGGGCCGGGCCAGAACGGCACGGAGGAGATGCAGGCCTCGGGGCCCGGCCCGGCCAGCATCGAAGGGGAGGCCAGTAACGAAGACGTACTGGTGTACGCGGCCTGCGAGATGAGGCCGAGCAGCAAGCTGGCGGACGGCAGCCCCAAGGTCACCGGGCAGGTGCTGTTCAAGCAGCAGTATCCCGATGGCAACCTTGAAGTGCTGTTCAATTTAGATGGCCTCCCCATCAACGACAACCAGTCCAGAGCGATCCACGTGCACCGGTTCGGAGACCTCAGCGACGGGTGCGACGCCACGGCCGGCCACTTCAACCCGGACCAGGCCGACCACCCCAAGCACCCCGGGGACTTCGGCAACTTCACCCCCAAGAAGGGCAAGATACGGAAGAGCAGTAAAGACAGCAAGGCCACCCTGTTGGGGCCCGACACCGTGCTGGGCCGCGCCGTGGTGATCCACGAGAAGGAGGACGACCTGGGCAAGGGCGGCGACGCCGGGAGCCTGCTGCACGGGAACGCGGGCAAGCGCCTGGCCTGCTGCGTCATCGGGGTGAGCTCGGCACATCTCTGGACCAGCGCCGCCGAGAGCCAGGCGCTGAGGAAGAAGAGCGCCAAGCGGCTGGCCAAGAAAAAGGTCTAGCTGCACGACAAGCTCGGAAATCTGGGACGTGATTTTGCCCCTCGCTTCTCTAATGGACAAGGTTCCTGCGCTTCTCcaagtgtttctttttcatttcacaacAATCTTAagagagaaatgtataaatatagacATGTTAGCAGTGCGGTGGGCTGACCTTTGCTGACACTTCTTGTGTGTGGTTTACAGGTGGGGGTCGGGACTGAAGTGTGTCGAGTGAATTCAAAGGGTAGAATTTACTTTATATGGAACAGGTTTAAAATGTACTAGAAGTCTCAGttctttaacaaaaaacaattgataACAACTTCACAGCTGTTCATAGTCAAAAGAGAAGGAATAGAATAATCTGCCCAACAGAGAGAAACCCGTCCCAGTCTGGTACTTTGGCTAAAGTACTTCTTACTAAACCCTATCCAAAACTTTCTGCAGCGCCAGCAGGTTTTATAACTCATTACACACAAACCTGCCGCCATCAAAAGTGTCAGTGGATTGTTTCAAGACTTTCCTTGGACAATGTGTTAATTTGTGCAATGTGCTCTTTGGCCCTGTTGAGTAAGATGTATCattatatgaatgttttttcttgtcttaCAAATACCATTAGAAACTAAAAAAGCATTATTCACCTCCTGATTAAAGTGTGGTTTGGGTTTAAATGTAGACGTGACTCttctttaaaagaaaggaaaaaggggAGGCCAACAGTATCTGAgatgtatctttattttaagtttaaagtgATGAAATGTAACTATCTATGCAGCACACGGTAAGGACAGCATCATGCAACCcaagcaaaatataatttgttcaaGTATTCCCACAAAATATAGTTTGCAAGGCGCCCAGTGATTAATTATACAGCCGGCCTGACACTCGGGACATTTCATTTACCTGAGATGGAAACAAAACGAGACagacaaaaccaaacacaaattttaatattcattaaaCCAACTGACCTGTAGTTGAAACAGGTGGTGATccacacaataaattaaaaatgaaagcgTTTCGTACAGAAGTCAGAATTAGTTTTTTCCGCAGCCAAGAACTCTTTATGGTAATGAGTGCGTGTGTCAGCGGGTTGGATTTCCATAAAAATCccattactgccttaaaatacaatcactggcagacacagaaaacaaccaccaccaccataataataataatatgaataatattaatctgAATCCGTGCAGGATGGAGGTTGTGTTAAGCAGCTGTGTGATCAGCTACAGTGTGAAGCTCTTGTGTTTACAAAGTTAAAGATACAACTCTCCCTGTTCACCAACCCAACCCAACCACCGGCACCGGGGCCCGCGGGTTCGTCAGCGCCGGGAGGCTCGTCTGAAAACAATTTCCAATCAGATACGAAAATATATCTCTATAAAAATCCAACAATTCCTTAATAAAATAGTCGTCAGATAACTCTTTGATCTGAcggcacatttattttaaatgcgtTTTCGTCTCGGCCCTCTTTGCTTCCTTGATTCATGCTAAGAAAGCCGTGTGTATAATTTGGATGTGAAGACGGAGAGATCGCGTAGAAGcgacaatacaaaacacacacagggcatGTACCAGGGCATCAACACATCCTTGGCACGTACTAGGACACAAACATGCAACTGACATGTTGTAGgacacaaacagacttttacagaGACAACAGACCACCACTGGCGTGTAAGGTGGTATGACTTTAACGTCACCTAGTGTTGAGATACCTGGCGAAAATACACTTTCCATTCCTCAGGTGTGTGAAATTgtccaaaagtaaaagtaactGCCCTTCCCACTTCCAAGTATTGTAACTGTAACCGAGCCGCAGACAAACTACAACTGAGGCCGGAGGGGTGAGGGATTTAACTTGTGGCAAGAAGAATAATTCTGTTCAAGTCCAGCGGTTAATGAGACAACAGATGCACAGCAAGCATTCCTCAAAACACACAGTCTTCACATTCAGCACATAATATACATCATCTTTAGCAACATCACTTTGACAACAACAttcctttcaaaacaaacttttgGCTCTGTCGAGAGGTCTGCTGCACTGGACAGGTCTACTCCAGTACCAAACCGGTTCAAGGCAAACGTCACAATGGGACCAACGTACACGTCCACCCGCGGACGCAGAGGGGAGACACAGGAGCACAATTACACAAAGCAGCGGCAGGCTCGTCTGCAGGCTGGCAAAGGTGGGCGACGACATTTTTCAACCGATGCCGCTAACAGAAATTCTTTGAATACTTCATTCTTTGGAAAAGAGCGAGGCAAGGAAACCCACAAAACACTGACAGTGAGGAAGCGGCTGCCAACGCACGGCACCACCGCGGCGCATGAGCGGCGCTTCTTCCAGAGAGATCCGAGTTCACAGTCAAACTGCGGCCGCAACTCTCGGTCACAGACCCTTATTAATGATCAACAGAAGATTGAGAAATGTCAGGACCGGATCTGAACACCGGGGCCGGGTTGCACAACTTACTGTGCCAAATGGACAAATATTTGCGTTCGGATTTGAGAATCTCAGTGGAATCACATCTCACTGCGTTACACACTGATCACCTGCAGGAATGCGACATTTTCAGTGTCTGAACTGGGAATCAACTCCTCATTCAGTAACatcaggaagagagagagagaaactgcttCAGAAGTTCAGAGCAGCTATTCCAACACGCCGTGAATTTGCGCAATGGTTGTTTTTggttcttctcctcctctctctctttatctcgaGTTCAAGAGCGTTGCGTGAAATCACACAATCTGTGAGCTTGTGCGTCCTGGGAGAATGTCACAACTCCCAGTACGGCGGACGAgaatacattgaaatgattttaaaaacttAGTTCCTTGGGAATCGAACGACTCTGAGCCGCGCTGAACACGGAGTtcagctaaataaataattatcgAATAAACACTTCTGTGGTAAAGCCGCTGCTGTTCGCAGAGATATCACAATGCTATgcgcccccccctcccccgcgcTTAGAGAGCATGCTGGGAGCTTTCTCAGGGACGCACAGCCGCGGTGCCTCATCTGCACACGAAACGGCTCCGAGAATCCCACCGGGGCCTGCGATCCCACCTGTCTGACACCCGTCACACCGTTGCTCGTTCCTACAGACCCGCCCCGTCAGGACTGCACCTCTTCCCAAACCAGAGCCCCTCCTGCGCCGATTACACAAGAACCTGCCACCAGTGAGGTGCGCTGGGACAACAGTGAATTAGGACGTGCGAACCCCCCAGGAAGAGAAAGACACATACACTTCCTATTCGATTATTCAGTAAAGATGGCAGACGAACCCCTCGTCCTTCTGCTCAGTGACTGTGGGGTGTGGAGGCAGCCGGAGGTCTAACGCTCTGGCAGCATCTCCTCACTAGTGAAGGGGATCCCAGGTCTCACCACAGCCATGAGAGAACTGGCCTCAGAGTCTGAAAGAGCCCCCAGGTTCACAGACGCAGGCAAGCTGCTCCCGCACGACTAAGCAGACAGGCTGCGGTGGGAGGAACGCAGCGGTGAGCCTTGAAGCAACACCGGAAACATAAATCAAGCAGGGCACACGCCAAACCAGCGCCAAACCAATGCCACACCAGggccaaaaaaatacaaattgaagtgCAGATGGGCTGTGATCAGGTTCCTTGAAGGGTAAAGCCCAGGCCGGGAGCCTCAGCTTCAGACACGAAGGCGGCATCCGAGTGGCACAGGCCTGCTGAAGCAGAGTGGGGGGGGCACAAGCACTCGGATGCCTGCTGCGGCCCCCGCTGCCAGTGCTCCGGTTTTTGATTAAAATCAGTAGATGAGCTGCTTCCCAGGGAGCCGGTCCTAATTACACCCCCCGGAGCCGAGGACAGTGGCTGTCACTGCGTgggagggggggcagagagCGCATTTCAGCTCCTCCAGCCGCCTGGCAGTCggcacacaacacaaacactggtTTAATcgattgtgtgtgcgtgtgtggggagggggcaAGACAACATCAGACACTGCTTTAGATTGTATTGTTCATCCTGGCTGTCTTTGTCCAGGGGCGGCTGAGCGGTGCCCTCGGCCTCAACGTCCGCAGCTCCCCTCCACAGTGGGGCATCACCCGGCAGTGAGGGTCCCATAAAGACCCCCGCGAAGGAGCCCATCAATAATCCTCCCCACACGCGATCCGACAGCTGCGTCAATGAAATCTACACACTAAGTAATGCACACCGGCCCCCGAGGGAGATGCACAGCCTCTGTGTTACGCTCAACTCGATCAATGACCGACTGTACAGAACCGCACCGAGCCGCGGGCATCAGCTACTCTCCCCTGAAGCCAGAGGACAATCCAACAAGCGCCGCCCCCCCACACAGGGCAGCGAGACGATCCCGAGCCTACAGGAAGGGATGCAAAAACTGCCGGCCTGTGTTAATGAGCCTCACATCACGACTTTCTCAGCACCGAGCTGAACCGGATCgatgcatttatttcagtttcatggTGGAGGCTGGTGTTCCAGACCACAGAGCACAGGACAGAAAAGCTCTGAAGATCCCACTGAGCTCTCATCTGACAGCGCCGACATTTCACTCGACCGTTTAGCATCATTAATGCGATTCCTACTGCAGCGAAACTGGCAATATTTCCTCCGTGTTGCTTTGGCGGCGACCCGGACACATTCACCACAATCTCATTAGCAAAGCTCCACTCACTCTGTGAAAAGTCACATCCCTGGAGCTGCATGCCAATAAGCCCGATAGCGGGCAGCCGTGTGGGCACTGCGGATAGGACGGCACACAACAAACCCCAAAAGGTTCCCGTTTTGCAAATTAAGCAATTTATAAACAAAGACGTGgtgttattttcaaaaagaaGAGCCAGCTGTCTGGCTATTGACTGCTggtctttttcactttttttgacGCAGCTTGAAGGCGATATTTAGTGTTTTGATGGAGTCACACagactcactctctctctctctctctctccctccctacTGCCACAATTGAATTCAAAATTTGCATCTCTGAATAAATGTTGCACTCATCCACATGCCGAGCTGCagtgcccccccctccccacgtCTGTGCGTCTCTCCACCGGTCAACACAACTTCAGTCCCGTAACGCAAGACAATAATAATGCGCTACAGTAAGCGATATGAAAAGCAGAGGTAATGGAAGAGCACCGATTCCAATGGTGACGGCTGATGTCAGGACCACATCAGAAGACAAGCTTTCACCAGCTGTTTCAGTAGCACGTTTGAATCCtcattacccccccccccctatgGAAAGATTCTCAGCTTATTTTTGTGGAAAAACCCGGATAATGAGGTCTGTGCCAAATCCAGCTTTTCAGTCATTTTCCTGTAAGTGTCTGAACCAACACGTTTCAGCTGAAGGCCACGAGCTCTTGAATCACAGCTGCTTacgtctctctcgctctcttttcatcaaagaaaaaaataaaattgacaatTGATGATAATGAATGTCAACTTCTGTCATTCTTGAAATGCACTGCAGGTCAACATAAACACGCAGACAAAACCACAGTGTGCAACATCTTCACTTAGGGTTGAAAAAGCAAACTGAtttaaaagaatacattaaaaggtTTATCCTTCACGGCGATGCTGACCCACGCATTTCTCTGCGGGTCTACAGTCTGTGTGAAATGAGTCACGGTAACGAGGGGTCAGTAGACGAGCCGGAGCCGGTGGATCTGTGAGCCGGCGGCAGCATCCCGGCCAGGCAGGGGAAGCAGATCTGGAAATCATACAGCGCCACCTATGCCCTTCTCCCCGAGCCCTCTTCAGGCCGAGCACCCCCTCCGGTCCCCGAGGGGAGGAGCCTGTCTGCAGgaccccaaaaaaaaataacccgTTGCTCacaccaaattaaataaaagaaaaaacacaaacaggagaCGTGTGGGTGAGGCCAAAAGCGCAGTTTGTTGCAAATCttaagttttttctttaatgcgTCATTAGGATCTGCGGTTCAGGGGGGATCTACGCCAGACTGTGGCTACAATAGTCCTCGCTGCTCCCCGAGTCACAGCCGGCGCCAGCCTCGGCCTCCCGGGGCAGTAAGGGGCTGCTGACGGAGGTGCCCCGGGGGGGCGGTGCATGGATGCGGGCAGCCTCTCCAGGGTTCCCCGACTCTGAATCGGTGTCTGGGGGTGTGTCGTGGCCCTGGGGGGGCTCTGCGGCACCGTGTGGCGCCCACTCCTGCCCCGGGCCATGCGGTGCAGTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16627 SOD3; superoxide dismutase, Cu-Zn family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118126 lncRNA upstream 22117 32091420 ~ 32093044 (+) True G94713
TU118092 lncRNA upstream 215481 31898502 ~ 31899680 (+) True G94681
TU118074 lncRNA upstream 250959 31859994 ~ 31864202 (+) True G94668
TU118070 lncRNA upstream 347313 31767636 ~ 31767848 (+) True G94664
TU118014 lncRNA upstream 485848 31628605 ~ 31629313 (+) True G94613
TU118156 lncRNA downstream 41446 32164819 ~ 32165297 (+) True G94739
TU118191 lncRNA downstream 110398 32233771 ~ 32237191 (+) True G94763
TU118234 lncRNA downstream 224089 32347462 ~ 32350363 (+) True G94792
TU118236 lncRNA downstream 224089 32347462 ~ 32350363 (+) False G94792
TU118290 lncRNA downstream 337925 32461298 ~ 32466636 (+) False G94838
AMCG00017985 mRNA upstream 369180 31740568 ~ 31745981 (+) True AMCG00017985
AMCG00017981 mRNA upstream 440124 31659901 ~ 31675037 (+) True AMCG00017981
AMCG00017982 mRNA upstream 465569 31645825 ~ 31649592 (+) True AMCG00017982
AMCG00017980 mRNA upstream 494055 31609218 ~ 31621106 (+) True AMCG00017980
AMCG00017978 mRNA upstream 1283294 30819869 ~ 30831867 (+) False AMCG00017978
AMCG00017996 mRNA downstream 58329 32181702 ~ 32186561 (+) True AMCG00017996
AMCG00018002 mRNA downstream 68376 32191749 ~ 32194198 (+) True AMCG00018002
AMCG00017995 mRNA downstream 88806 32212179 ~ 32217730 (+) True AMCG00017995
AMCG00017997 mRNA downstream 95336 32218709 ~ 32228691 (+) True AMCG00017997
AMCG00018001 mRNA downstream 114038 32237411 ~ 32238888 (+) True AMCG00018001
TU117593 other upstream 2664814 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 3471178 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 7399540 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 11293214 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 11299615 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 284056 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 337925 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 384317 32507690 ~ 32601449 (+) True G94857

Expression Profile