RNA id: AMCG00017990


Basic Information

Item Value
RNA id AMCG00017990
length 3993
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00017990
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32143816 ~ 32151676 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcTGTTGCGTCCCTGCCGAGCAGCTCCAGGGGCTGATAAATAATTCACCCACACAGCTTGGTGCAGTTCATGGTGCAGCGAGTCAGGAGCTGTTTGCATCGCCACCCTCCTCTCCAACACACATGCAAGCCTGCGATTCGAGATGTTGTCTCCCAGTAAGcagcttttgttattttctccGGTGTTTCTGTACCTGATTGCGGCAGTTTACGCCAGACGGGTTTTCCGATGTCCTTCTACATGCACCTGCACCAAGGAGTCTATTATATGCGTCGGGTCTTCGTACGTCCCGAAGATCATTCCCAATGACATCAATTCACTGAGCATCGTAAATGGCACCTTCCCTGAAATTAAGGAAGGGATGTTTTCCCACATGCCCTCCCTGCAGCTCCTGCTTCTCAATTCCAATTCATTTACCACCATTAAGGACGATGCGTTTTCTGGGCTTCCACACCTCGAGTATCTATTCATCGAGAACAACAGGATAGAGTCGGCGTCGAAATGGTCCTTCCGCGGCCTGCGCGATCTGACTCACCTGTCCTTggcaaacaacaacatcaaGGCTCTGCCGAGAGACATCTTTGGCGATCTGGACTCTCTGATAGAGCTGGACCTGAGGGGTAATGCTTTGGAGTGCGACTGCAAGGCCAAGTGGCTGATGTTGTGGTTGAAGACCACCAACGCCACGGTGTCCGAGGTGCACTGCGTCGGCCCGGCTGAGATGAAGGGCAAGAGGCTGAATGACCTCGTCAGTCTACACGACGAGTGCAAGTCCACAGACTTTGTGCTTCATCAGTCTCTGGCGTCTCAGTCGTTGTCCGTCGACACCTTCCACCACAAGAACGATGTGTTCGTGGCCATCGCGGCGCCCAACACCGAGAGCTGCATGGTGATGCAGTGGGACCACATTGAGATGAACTTCAGGACTCACGACAACATCACAGGGCAGTCCATTGTCGGGTGCAAGTCTGTGCTGATTGAGGCCGACGTGTTCATCATTGTAGCACAGCTCTTTGGGGGCTCCCACATCTACAAGTACGACGAGAGCCAGAGCAAGTTCACCAAGTTCCAGGACATCGAGGTGTCCAAGATCTCCAAGCCCAATGACATCGAGACCTTCCAGATCGACAAGGAGTGGTTCTTCATCATCGCGGACAGCTCCAAGGCCGGCCTGTCCACCCTGTACAAGTGGGAGAGCAAGGGCTTCTACTCCTACCAGTCCCTGCACGAGTGGTTCCGCGACACCGACGCCGAGTTCATCGACCTGGAGGGGAAGCCCCACCTGATCCTGGCCAGCCGCTCCCAAGTGCCGGTGATCTTCCAGTGGAACAAGAGCGCCAAGAAGTTTGCGGCCCAGAGCGAGATCCCCAACATGGAGGACGTGGTGTCCGTGAAGGCCTTCCGGGTCAAGGGGGAGCTGTACCTGGCCCTGACGCGCTTCATCGGTGACTCCAAGGTCCTGAAGTGGAGCAGCAAGCAGTTCTCGGAGGTCCAGGCGCTGCCCTCACGCGGCTCCATGATCATGCAGCCCTTCTCCTTCAGCGACCGGCACTACCTCGCCCTGGGCAGCGACTACACCTTCTCGCAGATCTACCTCTGGGACGAGGAGAAGAAGCTGTTCGACAAGTTCAAGGAGGTCTACATCCAGGCGCCGCGCTCCTTCACCGCCGTGTCCACTGGCCGCCGGGACTTCATCTTCGCCTCCAGCTTCAAGGGCAACACGCAGATCTACGAACACACGCTGGTGGACCTGAGCCTGTGAGACACGCAGGCTGGAGTCGCTGCAGCGGCGTCTGGTGAAATCCcaggttgagagagagagagagagagagagagagacttcctTGTGGCATTATCAGGTATTTATTCCTAAACGATATGATAATGatgtttcatgcatttttacTAAGGTTTTAAACTGACAGCTCCAGTAGCACTTTTAACCATTTGATACGCACACGTAACGATAGCTAAGCAACCTGCGAAAACGTCCCGAGCAGAAGACCATTCAAAGTCATCGTGCATTTTCATCTTAACGGACAGGGCGAGGAAAATGTCTTCTGAAGTTCTGTCAGACTCCAGTGGCCACTTCGGTGAAATATCTTGCCTTATCTCTACAAGGGTTGTGTGTCTAAATCTCTGCGGCATCTCCATCCCATCGCACCGTATCGGACACTCTCTCTGGAGGAAGGCTGGAAGAGAGCCATTCACCATTTTGCATAGTTCACAGACACGCATTTCACGTCTGCATCGAGTGATGGCTGAAGCTCTTTCACAGATGCTCTCCTGCCTGACATTCCTGTATATTATAACACAAAACAGATCCCTGCGACCAGCGAGTAAAAAGTCTGGAGCCTGTTTTTGCAAAGCTTCTGTACtacagacacagggacacactaAGCCACTTACACTTCCCAATTTAGGGCCCAAGAAAGTATCAAAAGAGCAGATAACTCTAGCTCCTACAGGTAAGTAGAGACTAATGAAAGCCCTTCTTTGTTTTGGTTCGGTGAGAATAGttgtatttaattcagtaaTTGACCTGTAATCAGGATTGTTTGCCTGCGGTCTATATGATTgcaatgacaataaaaacagcagtaaGAGCTCCTATAACCACCTCAGTAAATTACAATGACAAGTCTAAACACACAAAACTGCGTCGACTATAGTGTTTATACTGTTGTGTCTGCGTTCCTTTACGATCACATTATTCAGAAATAATTAGTTTGGCAGAACAGTGGCACCGGACACGCGTCGCCACAGTAATGCTGCCACTCCGACACGCTCGTCCCACATGCATGACCTCGTCTGGATGGTGTCATTTGTACGTATGAAattggtaaaaacaaaaactgaaatttaCATCCaatcttccaaaatatatgaaggtttatttaaatgcatttcaggaacaggataacatgtatttaaacactGACGTCCAGCCCTCATCACTCTGTGGGGCTTGAGGAATTTGTAAAGCCCTAGTTTATACTCATTATATACTTCATGACATACCATTTTGTCCACATGTATGTTAAAGTTGCGTATTGCATGGGGTGTGGCTGCCAAATACGTAGTGTATCCAAATCAATTAAAGGACCAATCACAGATTCAATCAAAGGCAAGAAAAGCATATAAATATTTCCCCTATTAAACCTATATCTTCTGCAAAACATAATATAAGTAAGATACTGCAGTAACAGaaccaaatatttgtatttaaaaccataatGAACTGAATATTAAGCCTGTGAAAACAGAACGAAGTATGATAGTAAAGGATGTAAGTGTCCTGATAGTTCAGATGACAAGAACActtcagtacattttaaattattagctacaaatgtgtttttctgtcaaTACCCTGATGGTGCAACTATAGTTTCCACAAATACAAGTACTGGTCCAGGTCActgacaacacacaacacacacaaaaaaagacacacGGCTGTAATGTGTCAACTGCCAGGGACAGCCTTTGTAAACCAAAAGGCCAGTCCGGTCATCAGCAGCGCCTCTGTACGGGGAGCCATGGCCTGTCCACGGGGTTCTATTGCCTGAGAGGGACAGGTCCATCTCACAGTATTGAAATGAACACGCTCTGCCTGTGCTCCACACCCCGCACAGATTTCCActcatgtttgtattgtttcacAGCACACTGAAAGCCAGTAACATTTCACCCACAATCAACAGAAAAAAGACGCAGCGGGTGAGAGCATGCCCCCCAGGCCCGGATGCGAGAGCATTCCGGTTCGGGACAGATTTAAAACTTTGAATAATCTCTAGTAGAACTACTACTGCTGTTCCTGGTATGACAAGTACTCGGTGGTATTGTATCCAGTAGTACTCCTTAATCAAATATGCAAGTTTATGACATGTAGATTTCTTTTTGTATCATTACAGTATGTTATAATCTTATCGAATGTTAGCCTTGTAGATATACTTGAAGATGACAATAAAAATGCTACTGATTATCAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 315016 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 402157 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 521438 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 626780 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 685562 31457879 ~ 31458254 (-) True G94598
TU118171 lncRNA upstream 40507 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 193574 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 504354 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 638103 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 696590 32848266 ~ 32848466 (-) True G94936
AMCG00017992 mRNA downstream 3365 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017991 mRNA downstream 32352 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017988 mRNA downstream 249010 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017987 mRNA downstream 260138 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017986 mRNA downstream 428383 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017993 mRNA upstream 4095 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017994 mRNA upstream 12387 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017999 mRNA upstream 48077 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00017998 mRNA upstream 82175 32233851 ~ 32248178 (-) True AMCG00017998
AMCG00018000 mRNA upstream 108031 32259707 ~ 32263865 (-) True AMCG00018000
TU117930 other downstream 1485323 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2870648 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3267893 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3999227 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 6033742 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 111100 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 120018 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 142344 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 303409 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 451242 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile