RNA id: AMCG00017991


Basic Information

Item Value
RNA id AMCG00017991
length 2874
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00017991
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32088147 ~ 32111464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCGACCGCACGTCTGCGCGGAGGCGCTCGGATGAGGTAAGTGGTTCCGGTCGCCATCTTGTCGCCGCGGCTGTGGACGGAGAGGCGCAGTAGCGTGGTCGCCTCGGAGGCTGAGCTCGGCGTTTGCGATCAGCATGTCTAAGAGGCACCGGCTGGACCTGGGAGACGACTATGCGTCCACCAAGAAGCGCTCCTCCTCCGACGGGAAAGACAGAGAGCGGGACAGGGAGCGTGACGAGCGGCCGAAGGACAGGGAGCGGGACCGCGACCGGGACAGGGACCGCGAGCGTGACCGGGACCGGGAGAAGGACGTCAAGGTGCCCGGTGGCATCTCACTCAACCCCATGATGGCGGGGACGGGCATCCCCACGCTGAAGCAGTCCGCCATCCACCAGCAGATCAACCCCTTCACCAACCTGCCGCACACGCCGCGCTTCTACGAGATCCTGAAGAAGCGGCTGCAGCTGCCCGTGTGGGAGTACAAGGAGCGCTTCAACGACATCCTCACCAGGAACCAGAGCTTCGTGCTGGTGGGGGAGACCGGCTCCGGGAAGACCACGCAGATCCCGCAGTGGTGTGTGGACATGGTGCGTGCCCTCCCGGGGCCCAAGCGCGGCGTGGCCTGCACCCAGCCCAGGAGGGTGGCAGCCATGAGTGTGGCGCAGAGGGTGGCGGACGAGATGGACGTGATGCTGGGCCAGGAAGTGGGCTACTCCATCCGATTCGAAGACTGCAGCAGCGCAAAGACCATCCTCAAGTACATGACCGACGGTATGCTGCTCCGGGAAGCCATGAACGACCCCCTCCTGGAGCGCTACGGTGTCATCATCCTGGACGAGGCCCACGAGCGCACCCTCGCCACCGACATCCTGATGGGCGTCCTGAAGGAAGTTGTCAGGCAGAGATGCGATTTGAAGATTTACTTTGACAACTGTCCTCTGCTCACCATCCCGGGCCGCACCCACCCCGTGGAGATCTTCTACACGCCCGAGCCCGAGAGGGACTACCTGGAGGCAGCCATCCGCACCGTCATTCAGATCCACATgtgcgaggaggaggagggcgacGTGCTGCTCTTCCTCACCGGCCAGGAGGAAATCGATGAAGCCTGTAAACGGATAAAACGAGAAATCGACGACCTGGGCCCCGAAGTCGGAGACATCAAGATCATCCCGCTGTACTCCACCCTCCcaccccagcagcagcagaggaTCTTTGAGCCCCCCCCTCCCAAGAAGACGAGTGGCGCGATCGGACGCAAGGTGGTGGTTTCCACGAACATCGCTGAAACATCCCTGACAATCGACGGGGTCGTGTTTGTGATTGATCCTGGGTTCGCAAAGCAAAAGGTGTACAACCCCAGGATCCGGGTGGAGTCTCTACTGGTGACGGCCATCAGCAAGGCTTCCGCCCAGCAGAGAGCAGGCCGCGCCGGGAGGACCCGCCCGGGGAAGTGCTTCCGCCTGTACACGGAGAAAGCGTACAAGACAGAGATGCAGGACAACACGTACCCTGAGATCTTAAGGTCTAACCTGGGCTCGGTTGTATTGCAACTAAAGAAGCTCGGCATCGATGACTTGGTGCATTTTGACTTCATGGACCCACCAGCCCCAGAGACGCTCATGAGGGCCCTGGAGCTGCTGAACTACCTGGCCGCCCTGAACGACGACGGAGACCTGACCGAGCTGGGCTCCATGATGGCCGAGTTCCCCCTGGACCCCCAGCTGGCCAAGATGGTCATTGCCAGCTGCGAGTTCAACTGTTCCAATGAGATCCTGTCCATCACGGCCATGCTGTCAGTCCCACAGTGTTTCGTTCGCCCGACGGAGGCAAAGAAAGCTGCCGATGAGGCCAAGATGAGGTTTGCGCACATAGACGGGGATCATTTGACACTACTGAACGTCTACCACGCTTTCAAACAAAACCACGAGTCAGTCCAGTGGTGCTATGACAATTTCATAAACTACCGGTCGCTGATGTCGGCCGACAACGTCCGCCAGCAGCTCTCGCGCATCATGGACCGGTTCAACCTGCCGCGGCGCAGCACAGAGTTCACGAGCCGGGACTACTATATCAACATCCGCCGGGCGCTGGTCACCGGCTTCTTCATGCAGGTGGCGCACTTGGAGAGGACGGGGCATTACCTGACCGTGAAGGACAACCAGGTGGTGCAGCTGCATCCCTCCACGGTCCTGGACCACAAGCCGGAGTGGGTGCTGTACAACGAGTTCGTGCTCACCACCAAGAACTACATCCGCACATGCACTGATGTCAAACCAGAGTGGTTGGTAAAAATAGCTCCCCAGTACTACGACATGAGCAACTTCCCTCAATGCGAAGCCAAGAGGCAGCTGGAACGCATCATCGCCAAACTCCAGACCAAGGAATACTCCCAGTACTGAGCCCGGCTCGGCCCGACAGGGAAGCCACCTCGGCGCTCGCCGGTGGGGACATTTCAGTCGTGCACCATATCTCAGATTCACAGCCTGCGTTTGAaagatttttaatgttttctttacagttcagattatttttataacttttctttctcccttttttttgtgttttttttgtttttgtttttgttcgtACAAATTGCATAGTGGGACAAACAAAcgataaaaaaaagaacagaacctGTCATCGTTGGCATCGATTGCGATTCGGTTGTTTTAAAGGTGAACTCGAACTTCCCCgatgaggttttttttttcaacaggaATACGATTACTGACCATGTTGTGCATGAGCATTCATGTTGATGTTGACATTCCTTTTAGACATTGTGAACTCTTCGGAGAAATGTACTTAAGTAGACGGTCCTTGTTTCTTCGGTAAAGGAGCTTTGACTTCAATAAAATCGATTAATACCA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12820 DHX15, PRP43; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 259347 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 346488 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 465769 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 571111 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 629893 31457879 ~ 31458254 (-) True G94598
TU118171 lncRNA upstream 80719 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 233786 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 544566 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 678315 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 736802 32848266 ~ 32848466 (-) True G94936
AMCG00017988 mRNA downstream 193341 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017987 mRNA downstream 204469 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017986 mRNA downstream 372714 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017984 mRNA downstream 443949 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017983 mRNA downstream 480448 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017992 mRNA upstream 11666 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017990 mRNA upstream 32352 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017993 mRNA upstream 44307 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017994 mRNA upstream 52599 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017999 mRNA upstream 88289 32199753 ~ 32210966 (-) True AMCG00017999
TU117930 other downstream 1429654 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2814979 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3212224 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3943558 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5978073 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 151312 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 160230 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 182556 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 343621 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 491454 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068472 False 2806 mRNA 0.52 14 NC_007118.7 71278625 ~ 71331499 (-)
grasscarp (Ctenopharyngodon idella) CI01000043_00930835_00959810.mRNA True 3541 mRNA 0.48 17 CI01000043 930329 ~ 960211 (+)