RNA id: AMCG00017992


Basic Information

Item Value
RNA id AMCG00017992
length 2046
RNA type mRNA
GC content 0.64
exon number 13
gene id AMCG00017992
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32123130 ~ 32140451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGAGCTCAATACTGGCTCTACAGCGCCACCCCGTGGTCATCTGCAGGAGCGCAGGGATCCAGAATAACCCAGCTGGGATAGCCCGTGTAGCCATTCATGGACCATTTATTAAAACGACTAAACGTTATAAAGAGGGTGGAAGCGAGGCCGGCGGCGGGAGGCGGGGCCTGCGGAGATCCAGCTCACCTGTCCCGGGGAGCTCCGTCCGCTGCCTCGGCGATACCTCAGAAATAAGCCGGCGAGCGACCAGTGGCGGGCAGGAGGCCGGGAGGAGAGACGACACCGGCATGGAAGCGTCCAAGCGCAGCGAGAGCGACTGGCAGGGGCTGGTGGGGGAGTTCCTGGTTTGCAAGAGGAAACTGGAGAGCAAGAAGGAAGCCCTGCTGATCCTGTCCAAGGAGCTGGACACCTGCCAGCAGGAGAGGGACCAGTACAAGCTGATGGCCAACCAGCTGAGGGAGAGACACCAGGGCCTGAAGAGGAAGTACAGGGAGCTCATTGACGGCGACCCTACGTTGCCACCTGAGAAGCGAAACCAGGTGAATCTGGCGCAGCTGCTCAGGGACTCCCGGGAGCGCGGCAAACAGCTGGCCGAGGAGATCAAGGAGCTGAACCAGAGGCTGGCGGAGGCCCAGGGCGACAACAAGCTCCTGAGGATGACCATCGCCAGACAGCGGCTGGGCGACGAGGAGGTGGGGGCCCGGCACTTCCCTGCGCACGAGCGAGAGGACCTGGTGCAGCAGCTGGAGAAATCCCGAGAGCAGAATGAGGAGCTGGAGCTCAACCTCAAGACCTCAGTGGACGAGCTGCAGGACGTGAAGGCCGAGCGCACGTTTTACCAGGAGAAGGTGACCCGACTCAACCTGGAGCTCAACCACATCCTGGGGGGCCACGCCAACCGCATCATCGACCTGGACGCCCTGTGCATGGAGAACCGATACCTGCATGAGAGGTTTAAGCAGCTGCAGGAAGAAGTCAACCTGCTGAAGACCAATGTCATGAAGTACAAGAGTGCTCTGGAGAGGAGGAAGAACTCCAAAGGAAACGGAAAACCCAACAGCAGCGCCCTGACTGGGGTCCTCTCAGCCAAACAAGTCCAGGAGCTGCTGTCCGAAGACAACGGCTGCAGTCTGCCCGCCACCCCCCAGTCTGTGTCGGACTTGAAGTCTCTGGCCACGGCGCTGTTGGAGACCATCCACGAGAAGAACATGGTCATTCAGCACCAGAGGCAGACCAACAAGATTTTGGGGAACCGAGTGGCTGAGCTGGAGAAGAAGCTGAAGACGCTGGAAGTCTCTGGGTTGTGGAGTCTCCCAGGAGGGAGGGACACCATCACACTGTCTGACCCCACCCTGAGGGCCATCCAGGGGCCCGGGGCTCCGGTGCTTCAGACGGGGGATCGGCCGGCCCCTCCAAGTGCCCCAGGCACAGGCGACAGGACGGGTGCTGGTGAGGCGGTGATGGGGGGACGTGGCGGCCCGGTGGACGAGCATGGCGACCCCAGAGTCCGGGCAATGGCGCTCTTGGGACCGGGCGTTGCCAGCGGTGATGTCAGCTGCCAGGAGGTGGCCACCCCAGTGTCTCTGGGGGCCTCAGTAGAGCACTACAGAGACGGGGATCCCGCGCCGGGCCTGCTGGCCACCCTGCCCTCCCCGGCAGAGGAGATCGACCGGCGTGGGGCCGAGATCGTGAAGATGACGGAGGAGCTGGCAGCCGTCGAGCTGGAGTGCCGCCACGTGGAGTCCCCCCCTGAGGAACGGAGCAACGGGGCGGCCGAGCCGGCGCTGGACGCGGCCCCCACTGCACCGCATGGCCCGGGGCAGGAGTGGGCGCCACACGGTGCCGCAGAGCCCCCCCAGGGCCACGACACACCCCCAGACACCGATTCAGAGTCGGGGAACCCTGGAGAGGCTGCCCGCATCCATGCACCGCCCCCCCGGGGCACCTCCGTCAGCAGCCCCTTACTGCCCCGGGAGGCCGAGGCTGGCGCCGGCTGTGACTCGGGGAGCAGCGAGGACTATTGTAGCCACAGTCTGGCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 294330 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 381471 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 500752 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 606094 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 664876 31457879 ~ 31458254 (-) True G94598
TU118171 lncRNA upstream 51732 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 204799 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 515579 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 649328 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 707815 32848266 ~ 32848466 (-) True G94936
AMCG00017991 mRNA downstream 11666 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017988 mRNA downstream 228324 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017987 mRNA downstream 239452 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017986 mRNA downstream 407697 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017984 mRNA downstream 478932 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017990 mRNA upstream 3365 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017993 mRNA upstream 15320 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017994 mRNA upstream 23612 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017999 mRNA upstream 59302 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00017998 mRNA upstream 93400 32233851 ~ 32248178 (-) True AMCG00017998
TU117930 other downstream 1464637 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2849962 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3247207 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3978541 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 6013056 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 122325 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 131243 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 153569 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 314634 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 462467 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_06738507_06752689.mRNA True 2289 mRNA 0.45 12 CI01000049 6738125 ~ 6752817 (+)