RNA id: AMCG00017993


Basic Information

Item Value
RNA id AMCG00017993
length 1467
RNA type mRNA
GC content 0.63
exon number 12
gene id AMCG00017993
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32155771 ~ 32163981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCACTAACGGTGCTGCCACGATGAACAGTGAGAACTTCTCCCTGAGCGAGAGGCTGGTGTCGGCCTCCTACGTGCGCCAGGGATCGCAGGCGCGCCGTGGACATGAGCAGCTGATCCGACTGCTGCTGGAGCAGGGAAAGTGTCCTGAGGAGGGCTGGAGCGAGAGCACCATCGAGCTCTTCCTCAATGAGCTGGCCTTGATGGACAGCAACAACTTCCTGGGCAACTGTGGGGTCGGGGAGCGGGAGGGCAGAGTGGCGTCCGGCCTGGTCGCCAGACGGCACTACAGGTTGATCCACGGGATCGGACGCTCAGGGGACATCGCCGCCGTCCAGCCGAAAGCCGCGGGATCCAGCCTCCTCAACAAGATCACGAACTCAGTGGTGCTGGATATCCTGAAGGTGGCAGGTGTGCGAAGTGTCTCCAGCTGCTTCGTGCTTCCCATGGCGACTGGGATGAGTCTGACTTTGTGCTTCCTGACGCTGAGGCACCGGAGACCCAAAGCCAAGTACATCATCTGGCCGAGGATCGACCAAAAGTCCTGCTTCAAAGCCATGGTCACGGCAGGGTTCGAGCCGGTGGTGGTGGAGAACGTGCTGGAGGGAGACGAGCTGCGCACAGACCTGCAGGCCGTGGAGAGCCGGATCCAGGAGCTGGGGCCGGACAGCGTCCTGTGCGTCCACTCCACCACCTCCTGCTTCGCCCCGCGGGTCCCCGACAGGCTGGAGGAGCTGGCCCTGATGTGTGCGAAGTATGACGTCCCGCACATCGTGAACAACGCCTACGGAGTCCAGTCCTCCAAGTGCATGCACCTCATTCAGCAGGGGGCCCGTGTGGGCAGGATCGATGCCTTCGTACAGAGTCTGGACAAGAACTTCATGGTGCCAGTAGGGGGCGCCATCATCGCTGGGTTCGACGAGGCCTTCGTGCAGGAAATCAGCCGCATGTACCCAGGGAGGGCGTCCGCTTCCCCGTCTCTGGACGTCCTCATCACCCTCCTCACGCTGGGCACCGGCGGCTACAGGAGGCTGCTGAAGGAGCGCAAGGAAATGTACACCTTCCTCGCGGAGGAGCTGAAGACGCTGGCTGCGGCCCACGGGGAGCGGCTGCTACACACCCCGCACAACCCCATCTCTCTGGCAATGTCGCTCGGGAGCCTCGAGAAACAGAACCAGAAGGCGGTCACTCAGCTGGGCTCCATGCTGGGCTTCATGTCCCACTCCGCGCACTACCCCTGTCCGTACCTCAACGCCGCCTCCGCCGTGGGCATCACCAGGGACGACGTGGCCCTCTGTGTGAAGAGGCTGGACAAGTGCCTGAGGAGCTTCGGCAGGGAGAAGAGAGACCAGAGCGGCCCTGAGGAGCCCAGCATCACGGAGTCCAGCGTCACAGAGGCCGACGCCACGGAGCTCAACACTACTGAGCCCTGTGCGGCCGACACTGAGGGAGACAGCAGCCACTGA

Function

GO:

id name namespace
GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016785 transferase activity, transferring selenium-containing groups molecular_function

KEGG:

id description
K03341 SEPSECS; O-phospho-L-seryl-tRNASec:L-selenocysteinyl-tRNA synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 326971 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 414112 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 533393 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 638735 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 697517 31457879 ~ 31458254 (-) True G94598
TU118171 lncRNA upstream 28202 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 181269 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 492049 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 625798 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 684285 32848266 ~ 32848466 (-) True G94936
AMCG00017990 mRNA downstream 4095 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017992 mRNA downstream 15320 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017991 mRNA downstream 44307 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017988 mRNA downstream 260965 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017987 mRNA downstream 272093 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017994 mRNA upstream 82 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017999 mRNA upstream 35772 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00017998 mRNA upstream 69870 32233851 ~ 32248178 (-) True AMCG00017998
AMCG00018000 mRNA upstream 95726 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00018004 mRNA upstream 107845 32271826 ~ 32274835 (-) False AMCG00018004
TU117930 other downstream 1497278 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2882603 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3279848 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 4011182 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 6045697 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 98795 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 107713 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 130039 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 291104 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 438937 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile