RNA id: AMCG00017995


Basic Information

Item Value
RNA id AMCG00017995
length 1708
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00017995
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32212179 ~ 32217730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGACACATGTGCGAAAGCGTTAGGAAGCGGACGGTATGTGTTGCTTTTTCGTTTATAAAACCACCGTAGAGTTTGCTGGTAGTTTTATTCTGTTCATCGCTTCATTCAGAAAGGAGATAAGCGAGCTGCTGTCAGACGGAGCCGCAGTGCTCCGGGCTGGAGGGATATATGATCGACTCTGATTGCATTGAGATCTGTGATACGCACTCGGGGGGAGCAGAGCCATGTCTTCTGAGGATGCTGGGCAGGGGCCCGGGCAGGGACACCACAGCGCTGTCcaggagggacagacagagtcCCTGTCCAAGCGGCAGCAGAAGAAGCTGCTGAGACACAAGCAGTGGGAGGAACAGAGGGATCTGCGTAAGCAGAGGCGGAAGGAGAGGAAGCAGAAACGCAGGCAGGAGCGGCAGGAGGGCGTGGAGGGGGAGGAGGCGGCCGGCAGGAAGCGTCTGCGCAGGGAGGCCGAGCCCAGCTCTCTGCGCCTGGTGGTGGACTGCAGCTTCGACAGCCTCATGGCACTGAGGGATGTGAAGAAGCTCCACAAGCAGATTCAGAGGTGCTACGCTGAGAACCGGAGAGCTGTGCGCCCTGTCCAGTTTTACTTGACCAGTCACGGGGGGCAGCTGAAGCAGAACATGGACGAGAACGACAAAGGATGGGTGAACTGGAAGgaCATCAGCATCCGGTCGGAGCACTTCACTGAGATCctgaaggaggaggagctggtgtACCTGACCTCTGACTCGCCCAACGTGCTGCAGGAGCTGGACGAGACCAAGGCCTACATCATCGGGGGCCTCGTGGACCACAACCACCACAAGGACCAGGGGCTCCAGCACGCCCAGCTCCCGCTCAGCAGCTTCGTGAGGATGAACAGCCGCAAGGTGCTGGCGGTCAATCACGTGTTCGAGATCATGCTGGCCTACCTGGAGAAGAAGGACTGGCGAGAGGCTTTCTTCACCATCCTGCCCCAGAGGAAAGGGGCCGTGCCAGTGGGGCAGGAGGGCTCCCCCCCGGAGCAGGAGAGGGAGCGGGACTCTGACAGCGAGACGGAAACGGCGGAGACGGGCACGCCCAGCACAGGCCAGCGGGGGACACCGGGCGGAGAAGCGGGCGGAGAGGCGGGCGAGGCAGCGGGACACGACCCCGCTGGGGGGTCCCACACCGAGGGCACCGCAGCATAGGCACCAGGCGATGGACGTCTGTTTAAATTGAGgatacttttttaatttgacaagGAAGAGCTCaaattgagtttttttgttttatttatatttttttctctgatgTTTAGAGACCAGGGCTCGATCGGGCTGTTGTGTCAGTCAGGAGGGCTAGAGAGTTAAAGAATGGAATCAAACCCCCACAGCTCCTGCAGCGTGCTATAAATCTGTGTCCTGCTCTCCGTCTGCTGGCTGAccaggtgcatgctgggagaagGCCGCCAGCCACTCTTCTTGGGGACGCTGTATGGAGCGCTGTGGCTCCACTCCTCTCATTGTTTTTATCTTGGAGGTGCGTCTTCAGTTATTGCCTTTGCAGTCGAGCATCATTTCTGTTGGTTGTAAATTTGCAAAGTGTTCATATCAGTATTAAAAGTGGAATTGATGCCACCCTCGCTGTGTGAAGCCTTCAATTACAAACTCGGGTCCTCAATAATGTCCTCCGATAGCCTGGACTGTCCTACCCACACTAACGCTGAC

Function

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118156 lncRNA upstream 46882 32164819 ~ 32165297 (+) True G94739
TU118126 lncRNA upstream 119135 32091420 ~ 32093044 (+) True G94713
TU118092 lncRNA upstream 312499 31898502 ~ 31899680 (+) True G94681
TU118074 lncRNA upstream 347977 31859994 ~ 31864202 (+) True G94668
TU118070 lncRNA upstream 444331 31767636 ~ 31767848 (+) True G94664
TU118191 lncRNA downstream 16041 32233771 ~ 32237191 (+) True G94763
TU118234 lncRNA downstream 129732 32347462 ~ 32350363 (+) True G94792
TU118236 lncRNA downstream 129732 32347462 ~ 32350363 (+) False G94792
TU118290 lncRNA downstream 243568 32461298 ~ 32466636 (+) False G94838
TU118325 lncRNA downstream 299393 32517123 ~ 32535900 (+) True G94858
AMCG00018002 mRNA upstream 17981 32191749 ~ 32194198 (+) True AMCG00018002
AMCG00017996 mRNA upstream 25618 32181702 ~ 32186561 (+) True AMCG00017996
AMCG00017989 mRNA upstream 88806 32115161 ~ 32123373 (+) True AMCG00017989
AMCG00017985 mRNA upstream 466198 31740568 ~ 31745981 (+) True AMCG00017985
AMCG00017981 mRNA upstream 537142 31659901 ~ 31675037 (+) True AMCG00017981
AMCG00017997 mRNA downstream 979 32218709 ~ 32228691 (+) True AMCG00017997
AMCG00018001 mRNA downstream 19681 32237411 ~ 32238888 (+) True AMCG00018001
AMCG00018003 mRNA downstream 35100 32252830 ~ 32285111 (+) True AMCG00018003
AMCG00018005 mRNA downstream 99966 32317696 ~ 32345960 (+) True AMCG00018005
AMCG00018010 mRNA downstream 173512 32391242 ~ 32402757 (+) True AMCG00018010
TU117593 other upstream 2761832 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 3568196 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 7496558 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 11390232 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 11396633 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 189699 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 243568 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 289960 32507690 ~ 32601449 (+) True G94857

Expression Profile