RNA id: AMCG00017998


Basic Information

Item Value
RNA id AMCG00017998
length 4938
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00017998
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32233851 ~ 32248178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCGACGCACACAGacaacacgcacacacgcacacacacacacacacacacaccagatcacacacacacacacagcacagcacagcacacacacacaccagatcacacacagcacagacacacacacacaccagatcACACACCAGATCACGCACAGCGCTCTCACACCTCCACAGCACAGCGGTCTGGGATCAGCATCGGAGCCCCCGCAGCTCTCACACCTCCACAGCACCGCGTCTGGGTCGGTCCATTAGCGCTGCTATTTATTCGTCTGGCTGCGGAAGAGCCGAGCGATGGGGAAGAGAGCCGAGCAGAGATGCGATTTCAAGAGCTTCTTGAAGAAGAACTGGCTGCTGCTCAGCACCGTGGCCGCCGTGGTGTTAGGTATCGGGCTGGGCGTTCTGGTGCGCGAGTATGGCTCCCTCTCTCAGCTGGACAAGTACTACTTTGGCTTTCCCGGGGAGATCCTGATGCGCATGCTCAAACTCATCATCCTGCCCCTCATCATCTCGAGCATGATCACAGGTGTGGCGGCGCTGGACTCGGAGGTGTCTGGCAGGATCGGCCTGCGTGCCGTCGTGTATTATTTCTCCACCACACTCATCGCTGTCATCCTGGGCATCGTGCTGGTGATGACCATACAACCCGGCGTGTCCCAGAGCGCCGAGGACATCGACAGGACTGGCTCCACCCCCGAAGTCACCACCGTGGATGCCATGCTGGACCTCCTCAGGAACATGTTTCCAGAGAATCTGGTTCAGGCTTGCTTCCAGCAGTACAAGACCAGGCGCTCGGAGATAAAGCCGCCCAGCAGACCTGAGGGGAACAGCACCACCGCTGCCACTAACGTGACCAAGGACTACAAGATTGTGGGCCTGTACTCGGATGGCATCAACGTGCTGGGTCTCATCGTGTTCTGCCTGGTCTTCGGGCTGGTCATCGGCCAGATGGGCGAGAGGGGACGCATCCTGGTGGAGTTCTTCGACGCGCTGAACGAAGCCACAATGAAGATCGTGCAGGTCATCATGTGttACATGCCCATCGGGATCATGTTCCTCATCGCTGGCAAGATCATCGAAGTGGACGACTGGGACATCTTCCGCAAGCTGGGGCTCTACATGGTGACCGTGCTGAGCGGACTGGCCATTCACGCGATCGTCTGCCTGCCGTTGCTGTACTTCATCTTTGTGAGAAAGAACCCGTTCACGTTCGCGCTGGGGATGGCCCAGGCGCTGGTCACCGCTCTGATGATCTCCTCCAGCTCAGCCACCCTGCCTGTGACCTTCCGCTGTGCAGAGGAGAACAACCAGATTGACAAGAGGATCACGCGCTTCGTGCTGCCTGTTGGCGCCACCATCAACATGGACGGCACCGCCCTCTACGAGGCGGAAGGGCTGGTTGGCTACCTTCTTGTGCAGCACTGGGGGGGCAAGGGAGGGATGGATTACAGGCACAGCATTACCGCCACGGCGGCCAGCATCGGAGCGGCGGGGGTCCCGCAGGCCGGCCTGGTCACCATGGTCATCGTCCTAACGGCGGTGGGCCTGCCAGCGAATGATGTCACTCTTATCATCGCCGTGGATTGGCTGCTAGATCGCTTCCGCACCATGATCAACGTGCTGGGAGACGCCTTCGGGGCCGGCATCGTGCAGAAGCTCTCCAAGAAGGAGCTGGAGCGCATGGACCTGACGTCTGACGTGGACGTGGTCAACCCCTTCGCCCTGGAGACCACGATGGACGAGGACGAGTGCGAGAAAAAGTCCTACGTCAACGGGGGCTTCACTGTGGATAAGAGCGACTCCATCTCCTACACGCAGACCTCCCAGTTTTAGCCGAGGGGCGGGCAGGCGGCAGGTACTGTATGGAGTCGGACATGACTGTGGCTGTGGTACTGTGATGCGGAGGACTATTAGAagaatgaatgtaaaaaaaaatatctaaacaagcaaacaaataatccCAGAGTTCAGCAATAGCTGcgatattttctattttaaaagacTCACATCCCTGATGTTTGAGGCACTGTGCGTTTGTGCCAAAAAGGAAAGGGGAATTCAGGTTATATGAACGCTTGCTCATACAGGCCCCTCTTTTATAAATGTGGCCACATTGGTGTTTAAAGATGCGGCATTTCACGGAGACGCAGGCCTTTCACAGAGGTTAGGAATAGACCCGCTTTGTGATGCTTCGTTTCTGTGTACAAGCAGCTGTGGAAAGTGTAGTGGCCATTCTTTGCTGAAACACAAAAGATTTCACACATTGATGTGCCATGCCATTGTCACACGCTACCATATCTGCCTCCATCCTGGGCTCCTGTCCTGTGCCTGTGGGCATTGAGCATCCTGGTGTCTTTCTGTGTGCCGTGTGCCAAAACCGTGGACTTGCATCAGTCTGACCGCCCAACTGTGTTCTGTGCACCTCCCGTGACTCACCGCATGGATACCACTACCGATCGACCTAAACCGTTCAAGGTCACCGAGCCGAGACCCACTGGAAGAGACTGTGAGGATCTGAGCATGTGAAATGGGTCAGGCACCTTTTAACTGACGCTAAGCTTTCGTGCCAAATGAGATGACGCAGCTACAAAAAGGGATCTTTGTCCATCtgtcatttttatatgtagCATGAACCCATCGGCGAAAGGGAAATTATTACTTAGTGTGAAAGAAAATAGccttaaattaatgttttttggcactgatttaatgattttttcCTGCTTCAGAATGATGCTCCTTAACCAACGCTGTAATCCAGTGTAGTTGCGCTATAAAGCTCGCTTCGCGGTCCGCAGGTGCAGTTCGTTGTGATGTGTTGACCTCGCACTGTGCTTAATAGGGACTGAAACGCCACACCGCAGGCCCGGCCGGGATGTGTGGCAGACATATCTCTGTACTATAACCACATGAGATACTTAAACAGTCTCTTCTCAATTATGGATTctaattaaaactataaaaaaccTGCCTCAATCAGCACTTAGGGTTTTACAATGCATGTAGATACCCACTGCCCCCCGCCCCCTTTCATTCTagagtataaaatataaatatatatgcgtAGACGCTCAGGCAGTGGGGACTTGGCGGCACAGGGCTGGTTTCTTAGGCCATTCATTGCACTTAAATGGAATAAATAAGAAACTAAATACATAGATATCAGGAAATAGAAAAGGAGGATTCTGCTGGGGGTACTGACAGAAGCTCTACCCAAACATCACAGCTGCAGATCTCTGGCCGGACCGTTCGATCGAAGGCTGCTGTTGCACGGTTCACTGTATCGCCCTGATGCGACTCCAGCGCACGGACCTGCCGCTCGGCTCGGCTCCAGCGCCGGGCCTGGCGGCTCCGTGGGGGgtgtctgttttaattgaacTCCATGTTCCGAAACCAGAAATCGCTTGAAgctattttttcatatatatttttgctcaAAGGGATTTTCATAATAATAtccaaaaaattaataaatatcaatCTGATCATTTAAATCTTCATAATGTTTGATACGTAGATGCTAGATCATTCttttataacattgtttcattgtttgttatattttaaccTTGGGGACAACAAGGCCAGCAGCATTTATTGCCAATTATTGTTTAAAGAGATGGTACTGTTTAGTGTGTTTCACTAGCGCTGCCCTCTCACTGcagaccagagagagagagagagagagagagagaggccactTCAAACCTGCACACGGACACACCGTGATCACTCAGACCAATTAATTCCTTGTGGGAACAAGAAGACCCAGACctacatgcacaaacacacacccccacacacactcactcagagGTTAAGGATAGTAGGTGCTTTTTGACCTCGGAATGGCAATACTGTAGATATAAGTGATCAGGGGCGATATCCTCCTCgcctctgtccctccctcttttAAACTCTGCCGTGCCATTCAGAGTCATTGCACTTTCCTCTGGCAGCACCAGTCCAGTCCTGCTGCCTGCGCTTGGGCTGCCGTGTGACACATGTGCTGAAGCTGCTCACTGgcaagaacaaaacaagcagagaaacagagagatgTTCAGGCTGCATTGTGTGTCGGTCAGAGGTTGTCAGTCTTGCCCCCGGGGGTCCACATCCCTGCTGGTGTGATAGGGAGCTTAATTCGCCAAAGCGCACAGGTGTGAAACACAGGGCTGTGCTCACTGAGACGGCGCATGAGCCAATGAGACTTCAGAGCCCAAATTGAAAGAGCGAGTCTCTGTGGCTCTTCAGAGCAGCCCCCAGTGTTCAAGCCAAGCACCCCCTAACGTCATcgatctgattggctgattcGCTGCATGAATTCAGTTCTTCTCTGCAGGTTAAACTACCGATCAGGCCTCCTTCCGGCCTTGAGGTGTGAGAGGCCTTACATATCATGTGATGTGTCTCTGAGTGATAATCTCAGTTGGCTGATTGAACAAttgtgaaaaaaactaaaacaaagactCTGTGGCCCTGCAGGAACTGgcgattaaatcaaaatgttaaccATTGACCTCTGACCCACGTGCTAATCGTAAGCTACAAACCTGCATGCACTTCAAAGCGCTTACATTGACGAGTAAAAAACTGAAGCATCTTAACAAAACGACTTGATTGAGTACCGAGTTCTGTTCTGTCGTTCCCTGTTAGCGGAGGGTGAATGTGGGGTTCATTTAAGCCCAGTCTGGGACTGAAACTCTGCtgcggacggacggacggaccaTTGTCAAACTTACTGTGCCAAACgtatgtcacttttttttttttatatatcttgaTATGCTCTGTATACTTCTGATGAAGCACATACTGTACAATATTAATGGGCAGTAATgaatattatacatgtatacattgatatgtaattatgtatgtgtTCAAAAACAATACTGGATGTATTAGactgataataaattaaacctaAATCCTGAA

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05612 SLC1A1, EAAT3; solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118171 lncRNA downstream 37245 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 405051 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 492192 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 611473 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 716815 31516832 ~ 31517036 (-) True G94600
TU118233 lncRNA upstream 97072 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 407852 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 541601 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 600088 32848266 ~ 32848466 (-) True G94936
AMCG00017999 mRNA downstream 22885 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00017994 mRNA downstream 59989 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017993 mRNA downstream 69870 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017990 mRNA downstream 82175 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017992 mRNA downstream 93400 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00018000 mRNA upstream 11529 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00018004 mRNA upstream 23648 32271826 ~ 32274835 (-) False AMCG00018004
AMCG00018007 mRNA upstream 37307 32285485 ~ 32308080 (-) True AMCG00018007
AMCG00018006 mRNA upstream 99317 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018009 mRNA upstream 132334 32380512 ~ 32381489 (-) True AMCG00018009
TU117930 other downstream 1575358 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2960683 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3357928 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 4089262 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 6123777 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 14598 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 23516 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 45842 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 206907 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 354740 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile