RNA id: AMCG00017999


Basic Information

Item Value
RNA id AMCG00017999
length 2943
RNA type mRNA
GC content 0.61
exon number 17
gene id AMCG00017999
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32199753 ~ 32210966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCCCTGGGAGCTCCTGCCTGAAAACTGCCTGCAGTCACAAAGACAGCTGAACCCGAGACCACCGAGACCACCGAGACCACCATGCTCACACTGAGTCTGATTGTCTTCTGCTTGATCTCACCGGCCCTCGGCGCGACCCCCATAGGTGAGAGATCTGTGAAAGCTGGGCTACGACTGGACAATGGGAAGCTGCACCGGTTCAGCTACTCCACCGAAGTGCTGCTGGACCAAGCCAGGGGGTCGGTGGAGGGCGGCGCGGGCTACAGGATGTCCTCCACCGTTGACATCAGCTTAGTCTGGAGAAGCCCAAGCAGCAAAGACGACCAGCTGGTCAAAGTAGCGGTGAGGGATGTGCGAATGGAGAATGTGACGCCGCGGCCGGACAACAGAAACATCTTCCTGGGCTCCACGGCGGAGAGCGTGCTGGGCAAGGGCAACCTGGCCGCCCTGCAGAGGCCCCTCATACTGCACTGGAGCGCTGGAAAGGTGAAGACCCTGTACTCCTACCAGAATGAACACACCGTCATCAAGAACCTGAAGAGGGGTCTAGCCAGCCTGATCCAGCTGCAGCTCACCTCTGGGAAGGTGGAGGAGGTGGACGTGTCCGGAAAGTGTGCGGTGGAGTACCAGGCGGCCCAGAACAGGGTGACCCGAATCAAGAACCTGGACAGCTGCAAGACCGCAGAGACCGGCTTCACGTCCCACAGTGAGGTGTTGGGGGTCAGCAGTAAGTCATCGTCGACAACCGAGTTCATCCTGCAGGACGGCTTCATCAAGTCTGCGGTGTCGGAGGAGGCGGTGACCCTGCTGGTGAACACGCGGCGCGCCACCGCGGCCACGGTACTGTCCAGGCAAGTGCACGGCAGCTGCGGGAGAcacgcgcgcgcacacacacacacacacgtgtcgCCTGCCTCCAGACCGCTACAGAAGCTGGAGCTGGTGAAGATGGAGGCCGGGCCCCAGGAGGTGGCGGGGAAGGACCCCGGCAGTGTGGTCAAGAAACTGGACCCCAAGCTGGAGCCCCTCGGCCTGGCGGCAGACCGAGTCAAGTCTGAGTGCAAGGGCTGCCCCTCGCTGTGGCAGCACTGGCAGAAGGTCCGGAAGCACTTCGAGCCCGAGAGTCTGTCCCACGCCGTGGCCTCACGCTCCTTCCTGGCGCTGATCCAGACGGTGCGCCGCTCACAGAAGGAGGAGATCCTGAAGGTCCTGCAGAACAGCAGCCGCTCCGCACTGCCACAGGTGGTGGACGCTGTCACCTCAGCCCAGACCTCGGCCTCCCTGGAGGCCGTCCTGCAGTTCCTGGACTTCTCGGACCCTAAGGGTCTGGTGCTGCAGGAGCGCTTCCTGTACGCCTGTGGGTTCTCCTCGCACCCCAACGAGAGGATGCTCAAGGCCCTGCTGGGAGTCTGGAATGGAAAGATTGGCAGCAGCGACATCAGGGAGTCTGTGGTGATTATCATGGGAGCCCTGGTGCGAAAGCTCTGCCAGAAAGGAGGCTGTGAGCTCCCGACCGTGCTGCAGGTCAAGAAGCTCATCCTGGAGGGGCCGGAGGGCTCGAAGGAGGAGGCCGAGGTCCAGATGTACCTACTGGCCATGAAGAACGCACTGCTCCCTGAGGCCATCCCTCTGCTCACCAAGTTCTCCGAGTCCGGGACCGGGCCCGTCAGCACCATCGCCATCACCACCCTGCAGAGATATGACCATGCGCTCATCACCGAGGAGGTAGGCCGCCCACCGCCCTCCCCTGACCAAAACGGAGCTCACTGTCATTTACTCATCACGGCCGTTGTCTTCCTCGTGTTGCAGGTGAAGAAGGCCCTGAACCGGATCTACCACCAGAACCGCCGGGTGTACGAGAAGTCGGTGAGGGCAGCGGCGGCAGACGTGCTGTTCAGCAGCAGCCCGAGTGCCATGGTGGTCCAGAACCTGCTGCTGTCCATCGGCTCCCTGCCACACGAGATGAACAAGTACATGCTCTCCAAGGTCCAGGACATCCTGCACTTCGACATGTCGGCCAGtaAGGTGGTGCGCAGTGCGTTGAGGAACATGGTCGCCCACAACTACGACCGCTTCTCCAAGATCGGCTCGTCCTCCTCGTTCTCCGGCTACATGGCTCGCGCGTCAGACACCACCTCCACCTACAGCCTGGACATCCTGTACTCAGGCTCCGGCATCCTCAGGAGGAGCAACATGAACATCTATGCCTTCAGCAGAGACACCCAGCTCCACGCCAGCCAGgtgGTGATCGAGGCGCAGGGCCTGGAGTCTCTGATCGCCGCCACGGCCGACGCGGGCGAGGAGGAGCTGGAGTCGTTCTCGGGGATGTCGGCGCTGCTGTTCGACGTGCAGCTGCGGCCCGTCACCTTCTTCAAGGGCTACAGCGACCTCATGGCCAAGATGTTCACCGCCACCGGGGAGCCCATCAACGTGGTGAAGGGCCTCATCCTGCTTATCGACCACTCGCAGgtgatCCAGTTACAGTCTGGGCTGAAGGCCAGTGTGGAGTTCCAGGGAGGTCTGGCCATTGACATCTCGGGCGGTATGGAGTTCAGCCTGTGGTACCGGGAGTCCAAGACCAGTGTCAACAACAGGGCCGCTCTGGTGTTGACGGGCAACGTGACGGTGGACATGGACTTCGTCACAGCAGGAACGGAGGTCAGCTTCGAGACCGAGTCCAAGCTGGACTTCATCACCACAGTGAAGTTCTCCGAGTACCCCTTTCTGGTGTGCATGCAGATGGACAAGGACTCCTTCCCCTTCAGGGAGTACTTGGTGAAATCTGAAAGCCTGCACTCGGGAAAAACCTTAGTCTCTCGCAAAGGGAGGAAGAGTGTCGTTCCTGGCTCTGAATTCCCCCTCCACCAGGAAAACTCGGACATGTGCAAGAAAGTGTTCACGGAGGACGCCGGCTGGTAGACAAACACACggaggggatgg

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0007586 digestion biological_process
GO:0015909 long-chain fatty acid transport biological_process
GO:0001579 medium-chain fatty acid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K14463 MTTP, MTP; microsomal triglyceride transfer protein large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118171 lncRNA downstream 3147 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 370953 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 458094 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 577375 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 682717 31516832 ~ 31517036 (-) True G94600
TU118233 lncRNA upstream 134284 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 445064 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 578813 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 637300 32848266 ~ 32848466 (-) True G94936
AMCG00017994 mRNA downstream 25891 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017993 mRNA downstream 35772 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017990 mRNA downstream 48077 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017992 mRNA downstream 59302 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017991 mRNA downstream 88289 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017998 mRNA upstream 22885 32233851 ~ 32248178 (-) True AMCG00017998
AMCG00018000 mRNA upstream 48741 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00018004 mRNA upstream 60860 32271826 ~ 32274835 (-) False AMCG00018004
AMCG00018007 mRNA upstream 74519 32285485 ~ 32308080 (-) True AMCG00018007
AMCG00018006 mRNA upstream 136529 32347495 ~ 32360816 (-) True AMCG00018006
TU117930 other downstream 1541260 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2926585 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3323830 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 4055164 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 6089679 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 51810 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 60728 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 83054 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 244119 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 391952 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile