RNA id: AMCG00018007


Basic Information

Item Value
RNA id AMCG00018007
length 1257
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00018007
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32285485 ~ 32308080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCAAGAGCTCGGTATGATGATGAAGAAGGCGATGCGCGGCTTCAGGATCTTCGTCGGGAGGAACTGGCTGCTGGTCTCCACCGTGAGTGCTGTGCTGCTGGGAGTGGCCAGCCTGGACTCGGGGATGTCTGGCCGGATTGGGTTGCGTGCAGTCGTGTATTACTTATCAACGACCGTTTTGGCTGCCATCCTGGGCATCGTGCTGGTGATGACCATCCAGCCCGGTGTGTCTCAGAGCACTGAGGACATCGACAGGACCCACTCTGCCACAAGGGTCAGCACAGTGGACTCCATGCTGGACCTCCTCAGGAACATGTTTCCTGAGAATCTCGTCCAGGCTTGTTTCCAATCGCCGCCCAGCAGACCTGAGGGGAACAGCACCGCCGCTGCCGCTGTGACCACCATCATGACAACCGCAGCGCTGGAGAACGTGACCAAGGACTACAAGATCGTGGGCCAGTATTCGGACGGCATCAACATGCTGGGCCTCATCGTGTTCTGCCTGGTCTTCGGGCTGCTCGGGCTCTACATGCTGACCGTGCTGAGCGGACTGGCTATTCATACTCTTATCGTCCTCCCATTGTTGTACTTCATCTTCGTGAGGAAGAACCCGTACAAGTTTGCACTGGGGATGTCCCAGGCGATGGTCACCGCTCTGATGATCTCCTCCAGCTCGGCTACGTTGCCGGTGACCATTCGATGCGCAGAGCAGAACAACAGAATTGACAAGAGGATCACACAGTTCATGTTGCCAATCGGCGCCACCATCAACATGGACGGCTCTGCCCTCTATGAGGCCGTGGCGGCCGTCTTCATTGCACAGCTGGGCAACTATGCGCTGGACATTGGCCAGATCGTGACCATCAGTGTAACGTCCACCCTGGTCAGCATCGGAGCAGCAGGAATCCCCTCTGCCGGGCCAGTGTCCATCCTGATCGTCCTGTCCGCAGTGGGCCTTCCCTACGACGACGTCATGGTCCTCTTCGCCGTCGACTGGCTGGTTGATCGTTTCCGCACCATGATCAATGTGCTGGGAGACGCCTTCGGGGCCGGGATCGTGCATAAGCTCTCtgagaaggagctggagcagatgGGGCAGATGGACCAGGAACTCAGTAGGGATGCATTCAGGCCCTTCTCTCTGGAGGCTCCAATGGATGAGGAGGAGTCAGAGAAAAAGATTTATGACAACGGCGGCTTTGTTGAGGATATGAATGAGTCGGACTCATACACCAAGATATCTCAGCTTTAG

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118171 lncRNA downstream 88879 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 456685 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 543826 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 663107 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 768449 31516832 ~ 31517036 (-) True G94600
TU118233 lncRNA upstream 37170 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 347950 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 481699 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 540186 32848266 ~ 32848466 (-) True G94936
AMCG00018004 mRNA downstream 10650 32271826 ~ 32274835 (-) False AMCG00018004
AMCG00018000 mRNA downstream 21620 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00017998 mRNA downstream 37307 32233851 ~ 32248178 (-) True AMCG00017998
AMCG00017999 mRNA downstream 74519 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00017994 mRNA downstream 111623 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00018006 mRNA upstream 39415 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018009 mRNA upstream 72432 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018008 mRNA upstream 73470 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018015 mRNA upstream 116945 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018016 mRNA upstream 153514 32461594 ~ 32478852 (-) True AMCG00018016
TU118225 other downstream 9113 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 21954 32262776 ~ 32263531 (-) False AMCG00018000
TU117930 other downstream 1626992 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 3012317 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3409562 28874161 ~ 28875923 (-) True G94172
TU118287 other upstream 147005 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 294838 32602918 ~ 32605751 (-) False AMCG00018021
TU118371 other upstream 340384 32648464 ~ 32652684 (-) False G94887
TU118375 other upstream 340384 32648464 ~ 32652684 (-) True G94887

Expression Profile