RNA id: AMCG00018008


Basic Information

Item Value
RNA id AMCG00018008
length 1586
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00018008
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32381550 ~ 32387686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTGGCAGAGCGAATACAGGGCCTCAGTTTTGCCTGAGCCCGGAGACACACACCGCTCTTGGGTTTGCTCTGAACCGTGAGTGGCTTCATTGGTTTGGTCCATTTAATAGATCTTTGTTTATTGCTTTCAAGCTGCTATAAATCCTGCAGGACCTGCCTCGGCCTCATGATGTCTAAAGGCTGTAAGATATATTGTTTTGATAAACATGCAGTTCtgataaatacatgaatattgGAATTAACAAAGATCAGAGCAGTTTAAACCGTCTCTGTCACTCTGTATTCCCCTCAACACCGTCTTTTCGTCGGCAGAAAAACGTCCTGAGAAAACAGAAGAACTGGGAGAAGACACTGGCGGCAAAGAAAGgcaggaggaaggaggagaaaCAACGAAAGAAGCTGAGACAAGCTGAAGAGTCAGGGAGCGCACCGGACAGCCCACGGCACAGTAAGCGAGTCGTCAAGGCCATCACCAGAGAGAGGCTGCTGGGGGCCGCAGACGGGGGCCCCAGACTCTGCGTGGATTTGAGCATGACAGGCTGCATGTCTCACAAGGAGCTAAGTCGTCTGGCCGGTCAGATACGAAGGCTGTATGGCTCCAACCGGAGGGCTGCCCGTCCCTTCCACCTGTACCTGGCCGAGCTGCGGGCCGACAGTCAGCTGTACAGGGAGTGTGTGCGGAAGAACGCCGGCTTTGAGAACTATGTGATGGATGTGACGGAGCGGAGCTGCCTGCAGCTGTTCCCCCGGGAGAGTGTGGTCTACCTGACGCCAGACTCGGAGGACGTCTTGGAGCACGTTGATCCTGAGAAGGTGTACATCCTGGGGGGGCTGGTGGATGAAAGCGTTCAGAAGAAGCTGACGTACCAGAAGGCCAGGCAGAGCCAGCTGAGCACTGCCAGGCTGCCCATCGACGAGTACATGGTCAAGAAGGACAACGACAAGAACTTCCACTCCAAGATCCTGGCCATCAATCAGGTGTTCGACATCTTGCTGCGCTTCCGGGAGACGGGCAGCTGGTCGGCGGCCCTGCAGGCGGGGGTGCCGCCGGGGAAGGGCTACGTCAAGACGGTGCAGGCCAGGGACCCGCCAGCAGAGCCTGAGCCCTCCTCACCGCCGGACCAGTCAGCCCTGCAGGAGACTCTCGGCTGCCTTCGCTCCGTCACCGCTTCTCTGTCTTTGAAGGACCGGGGCAGCCTGCGTGTGGAGAGTGGGGGTCTGCAGCCCTGGGCCCGGACCCGCCCCTTCAGCCAGACAGTCGGCAACCAGGAGGCTGAGCGCCAGCCACGGGAAACTGCAGGCgcccagcagccccagcagcaCAGCGCCTCCGTGCGCACATCTACCCCCGACACGGTACTCTGCCCCGGGGCCGATGCCAGCCTCGCCGCTGCCGCAGTCGCCAGGGCCGGAAGTCCCTCCCCGCGGCGCCCCATTGGCGCAGACAGGCGCCCGCCCTTGTCGTCGCTGCCGTCCCCCTTTCTGAGCGCTTGTTTGGACGCCGAGGCCCAGTCCGCCCGGGATGAGATGATGCTCCGTGTCTCCCGACGCCCAGAAGAGGAAGACGAGGCCGAGGAAGAGTAA

Function

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118233 lncRNA downstream 34967 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 184944 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 552750 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 639891 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 759172 31621600 ~ 31622378 (-) True G94622
TU118408 lncRNA upstream 268344 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 402093 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 460580 32848266 ~ 32848466 (-) True G94936
AMCG00018009 mRNA downstream 61 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018006 mRNA downstream 20734 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018007 mRNA downstream 73470 32285485 ~ 32308080 (-) True AMCG00018007
AMCG00018004 mRNA downstream 106715 32271826 ~ 32274835 (-) False AMCG00018004
AMCG00018000 mRNA downstream 117685 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00018015 mRNA upstream 37339 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018016 mRNA upstream 73908 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018021 mRNA upstream 213503 32601189 ~ 32605750 (-) True AMCG00018021
AMCG00018020 mRNA upstream 270743 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018023 mRNA upstream 292901 32680587 ~ 32684608 (-) True AMCG00018023
TU118217 other downstream 86117 32294020 ~ 32295433 (-) False AMCG00018007
TU118225 other downstream 105178 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 118019 32262776 ~ 32263531 (-) False AMCG00018000
TU117930 other downstream 1723057 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 3108382 29269235 ~ 29273168 (-) True G94238
TU118287 other upstream 67399 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 215232 32602918 ~ 32605751 (-) False AMCG00018021
TU118371 other upstream 260778 32648464 ~ 32652684 (-) False G94887
TU118375 other upstream 260778 32648464 ~ 32652684 (-) True G94887

Expression Profile