RNA id: TU118260



Basic Information


Item Value
RNA id TU118260
length 849
RNA type TUCP
GC content 0.68
exon number 3
gene id AMCG00018012
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32407429 ~ 32425235 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGAAGCGGCTGCAACATGGCGCCGGCGTGTCAACACGGGAGTGAAGCGCAGACGCGCTAACATGGCTGCAAAGGACACACACTCGCTGGAGTCCCCCTTCACCCTGGACCCCTACAGGGAGCgggaaggggaggaggaggaggaggaggagggcagcagcagcagcagcagcagcagcagcgactCCGGCTCCAGCCGCTCAGACTCAGATGACCTGGAGCCGGAGTGGCTGGACGACGTGCAGAGGAACGGGGAGCTGTTCTACCTGGAGCTGAGCGAGGGCGAGGAGGAGGCTGCTCTGTCCCAGGCCGCCGCTCAGAGCCCGGCCCCCAACCACGTGCGCTTCAGCGAGCAGGAGGCCGAGATCATCCCGCACGGGGGGCCGCCGAGAGAGGGGCCCAGGCCAGAGCCCCGGCTCAAGAAACTGGCCAAGATCCTGAGGAGGAAGCGGCCATCCCGGCGCGGcggagacagacagggaggcCACGGCTGCCCGTCCTCCTCACGGCCGGCTTCCATCCTCAAGAGCCAGCCGGGGCCCAGGCCGGGGCCGACCCTGCAGCCGGCGCTCAGGGATGTCTGCGTCTACGTCAACCCCAAGAGGCTGACGGGCGGCGGGGCGGCCCAGGGGGGATTGCTGGAGGCCTTGATCGGCATCCTCCACCGCCCGGTCTGGGACAGGAAGCAGGACGGCCAGGGGGAGGAGCCCAGCGCAGCCAATGAGGAGGAGAGGCTGGCCGTGCACGGGCTGCTGCCAGGAAGCCCCGCCCTCAAGTGCGGCCAGATTCTGATTGGAGACGTCCTCATCGCTGTCAACGACGTGGACGTGACGTCGGAGAACATCGNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118234 lncRNA upstream 57066 32347462 ~ 32350363 (+) True G94792
TU118236 lncRNA upstream 57066 32347462 ~ 32350363 (+) False G94792
TU118191 lncRNA upstream 170238 32233771 ~ 32237191 (+) True G94763
TU118156 lncRNA upstream 242132 32164819 ~ 32165297 (+) True G94739
TU118126 lncRNA upstream 314385 32091420 ~ 32093044 (+) True G94713
TU118290 lncRNA downstream 49925 32461298 ~ 32466636 (+) False G94838
TU118325 lncRNA downstream 105750 32517123 ~ 32535900 (+) True G94858
TU118392 lncRNA downstream 335451 32746824 ~ 32762583 (+) True G94899
TU118399 lncRNA downstream 378452 32789825 ~ 32793141 (+) False AMCG00018027
TU118400 lncRNA downstream 383382 32794755 ~ 32797498 (+) True G94906
AMCG00018010 mRNA upstream 4672 32391242 ~ 32402757 (+) True AMCG00018010
AMCG00018005 mRNA upstream 61469 32317696 ~ 32345960 (+) True AMCG00018005
AMCG00018003 mRNA upstream 122318 32252830 ~ 32285111 (+) True AMCG00018003
AMCG00018001 mRNA upstream 168541 32237411 ~ 32238888 (+) True AMCG00018001
AMCG00017997 mRNA upstream 178738 32218709 ~ 32228691 (+) True AMCG00017997
AMCG00018014 mRNA downstream 14166 32425539 ~ 32428759 (+) True AMCG00018014
AMCG00018013 mRNA downstream 17861 32429234 ~ 32439006 (+) True AMCG00018013
AMCG00018011 mRNA downstream 31170 32442543 ~ 32460757 (+) True AMCG00018011
AMCG00018019 mRNA downstream 178802 32590175 ~ 32592904 (+) True AMCG00018019
AMCG00018018 mRNA downstream 182799 32594172 ~ 32601494 (+) True AMCG00018018
TU117593 other upstream 2957082 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 3763446 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 7691808 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 11585482 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 11591883 20799595 ~ 20815546 (+) False AMCG00017747
TU118291 other downstream 49925 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 96317 32507690 ~ 32601449 (+) True G94857

Expression Profile