RNA id: TU118408


Basic Information

Item Value
RNA id TU118408
length 2116
lncRNA type sense_over
GC content 0.47
exon number 4
gene id AMCG00018020
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32656030 ~ 32665115 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACGCCCGTCTCCTCTGTGTTTCAGCTCGTAAGCAGGAGATCATTAAAGTCACCGAGCAGCTGATCGAGGCCATCAACAGTGGGGACTTCGAAGCCTACACGAAGATCTGCGATCCTGGCCTGACTTCCTTCGAGCCCGAGGCCTTGGGCAACCTGGTCGAGGGCACTGACTTCCACCGGTTCTATTTCGAGAACGCCCTGTCCAAGAGCATCAAGCCCATCCACACCATCATCCTGAACCCCCACGTGCACCTGATCGGGGAGGACGCCGCCTGCATCGCCTACATCCGGCTGACGCAGTACCTGGACAGCAGCAGCATGCCCAAGACCATGCAGTCTGAGGAGACGCGCGTGTGGCACCGCCGGGACGGCAAGTGGCAGAACATCCACTTCCACCGCTCCGGCTCCCCCACTGTGCCCGTCAAGTAAGgtgacGGAGCTGCCACGCCCTCCTCCCGGAGctccgcccccccgcccccccgggCCGCTCTGTCCAGCCCCGTCTCCATCTCTTCCATCCCTTTCTTCATTGTTTACACTCCGCCGGTGGAAACGCTCTGTGctgaaataaaagacagaaatgcaaaaaaaaaaaaaaaaagtaattattctCACCACGTCGCGTGACGCTTAACGTGCTCATCTTCAGGACGGCGATCAGAGAAGTCATTTCTCTCGTTTCCTTTTCTTTGCCgctgtgtaaatgtttaatttagatTACTGTATATCTGCTAGGGTTGATATTGGTATGCAAGATCTGTGTTTACTAGCTGCGTTTGCTTATCGGAGTCCTCTTTAAAACTTACAAACCAGAAGGACCTTTAGCAATATGATCTGTGAAatactgtctgtctgttcatATCATATGAACCAGGCTGGGCCCTCAGCGGCCCTCAGCGCGTGGCCGCCCTGTCCTTCCTTCGTCTGATTCCCCTCAACCGCAGTCTTCAGGTCTCGGACTCGGCCGCTACGCGCAGAGCCATGACTCTTAAAATAAACCGCGCTTGCTTCTCTGGTGATGTTGTACAGACGTTGTGATTGCAGTAAACTGCTATAATTGCTTAACGAGGAAGATTAGggctttatttttgtgaacTCCGTTTTCCAGCTTCGTTCATTTGCTGTATACCAGTATATAACCGTACGCCGGACTATACAAAGTAAAACTAACAGGAATAATGATGTTAACAAAGGGAATTTTTGCTACAATCTTTGCCTATAACTAATCACGTATAATCTTCAcgttttgattattattgaatGTAAGATACGTAACACCATCGGATCAACGCAGAACTGACTGTTTTAATTCACGCCGTGatgtttttcatatttgctGATTTGTGAACCGAtccttttgattttctttcaatgGTTGTTTTTCGttaggttttgttgttttttttacttggtGTAATTGATACGTATTCCTGCCAATTCTGGGGTTTGGTTTCTCTCTCCACTCTTGTTTCGGTCGTGATGATACCTGCGGGGCTGCGCATGAAATCTCAGTCCGTGTGGCTTTAACTGGACAGCCTGTAGTTCAGTCCTGGCAACGATCTTTATATTAatgctttgtattatttcaacTTCTGTGTTAGTATCtcgatttaaaacaatatttacgatgatgttgatgttttataaggacaaaaaaaacaagtgaaataGTTCAGTCCAATCTGATTCGTCCTCACCTGGTTTGACTCATATCTATAGTTTTTGTAGATAGACTTGCGCATTTGGGTGTATTTGAGTCATGTCATTTTGCCAATAAAAGAGTtgtgtggaaacaaaaatacaataacttttctttttctgttgaCGGCTCGTATGGCACCAGTGTGTTTTCAATAAAGATGAATCTGTCAATGATGAATAACTGTGGCGCTCGGCATGTTAGTGTCTGACGTGGTGTCGTGGTGTTGGGGGGCTACAGTCATCCACTGGTCTTCCGGGGGggactcgctctctctcacagctAGACGGGACCCCCCCTCACGCTTCTGTAAAGCTGCCGTTCCCCACGGGACTCTGTGTACGACCTTCTCGCCATGAGCTGCAGCAATGGACTGATGGATATCTTTCAATGATAATAAACTGTGTGATTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118233 lncRNA downstream 309447 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 459424 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 827230 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 914371 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 1033652 31621600 ~ 31622378 (-) True G94622
TU118424 lncRNA upstream 128138 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 186625 32848266 ~ 32848466 (-) True G94936
AMCG00018021 mRNA downstream 50280 32601189 ~ 32605750 (-) True AMCG00018021
AMCG00018016 mRNA downstream 177178 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018015 mRNA downstream 226465 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018008 mRNA downstream 268344 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018009 mRNA downstream 274541 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018023 mRNA upstream 18946 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018025 mRNA upstream 26740 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018024 mRNA upstream 33319 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018022 mRNA upstream 105604 32767245 ~ 32776080 (-) True AMCG00018022
AMCG00018029 mRNA upstream 134243 32795884 ~ 32819447 (-) True AMCG00018029
TU118371 other downstream 3346 32648464 ~ 32652684 (-) False G94887
TU118375 other downstream 3346 32648464 ~ 32652684 (-) True G94887
TU118334 other downstream 50279 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 199620 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 360597 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile