RNA id: AMCG00018021


Basic Information

Item Value
RNA id AMCG00018021
length 1365
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00018021
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32601189 ~ 32605751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGGCATCACCCCGCTGCACGTGGCATCCAAGCGTGGGAACACGAACATGGTGCGCCTCCTACTGGACCGAGGAGCACAGATCGACGCCAAGACCAGGGATGGTCTCACTCCTCTGCACTGTGCGGCGCGCAGTGGACACGACCCGGCCGTGGAGCTGCTCCTGGAGAGAGGGGCACCCATGCTGGCCCGGACCAAGAACGGGCTGTCCCCGCTCCACATGGGCGCGCAGGGGGACCACGTGGAGTGCGTCAAGCACCTGCTGCAGCACAAGGCCCCGGTGGACGACGTCACGCTGGACTACCTGACCGCGCTGCACGTGGCGGCACACTGCGGACACTACCGCGTCACCAAGCTGCTGCTGGACAAGAGGGCCAACCCCAACGCCCGCGCACTGAACGGCTTCACTCCTCTTCACATCGCCTGCAAAAAGAACCGTGTCAAAGTCATGGAGCTGCTCGTCAAATACGGGGCGTCCATTCAGGCCATCACTGAGGTACGATCTGAGCCCGTCGTTTCCGGCCTGACCCCCATCCACGTGGCCGCCTTCATGGGGCACCTGAACATCGTCCTACTGCTGCTGCAGAACGGAGCGTCTCCCGACGTCAGCAACATCGTAAGTGGACactcttctgtctgtctgtctgtgtgcgggGAGGGAGAGAGCCTTATCGTTCCGGGTAAATGTGCAGGGAGGCTTTACAACCGTGCGTTCAGAGAAAGACAAAGACTTCTGCGGGGAGCGCAAGGTGTGCCGGACCCTGTGGGAAATCAGTCGATGCACAATCCTGGAGATCTCTGGAGAGCGAGAGCGGAGACACTCGCTGAGCTCAGCAGCAAGGAGTGCAAACGAGGACAGCGGGGATGGACTGAGCTTCTGCCCTCAtcagagtgtgagtgtgtagtcACAGTCATagcagtgtgtgagagagagtgtgtagtCACAGTCGcagcagtgtgtgagagagagtgcatacGTGGGGAGACGGCTCTGCACATGGCGGCGCGGGCGGGACAGGTGGAGGTTGTGCGCTGCCTGTTGAGGAACGGGGCACTGGTGGATGCCAGGGCCAGGGTGAGGACACGCCTACCGAACACGCTACACACACGCTACACACTCCACCGCAGCGCCGCGGTTCAGCAGCAGCGTGGCCACGTTGACGTTGCCATAGTGAGCTGCGATGTGCAGGGGCGTGAACCCGCTCTGCAAGAAAAGGCGGGACAGGGGGTCAGCGCTGGCTCGAGCTCCgcagccaatcacagctcaCCGATCCTCCCCCTCATGCAGCATCACACTAAGCATCACGGAAAGACAGGGTCAACTCCCCAAacggaggaaaaaaaacaccaactgaAACTCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118233 lncRNA downstream 254606 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 404583 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 772389 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 859530 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 978811 31621600 ~ 31622378 (-) True G94622
TU118408 lncRNA upstream 50280 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 184029 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 242516 32848266 ~ 32848466 (-) True G94936
AMCG00018016 mRNA downstream 122337 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018015 mRNA downstream 171624 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018008 mRNA downstream 213503 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018009 mRNA downstream 219700 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018006 mRNA downstream 240373 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018020 mRNA upstream 52679 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018023 mRNA upstream 74837 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018025 mRNA upstream 82631 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018024 mRNA upstream 89210 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018022 mRNA upstream 161495 32767245 ~ 32776080 (-) True AMCG00018022
TU118287 other downstream 144779 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 305756 32294020 ~ 32295433 (-) False AMCG00018007
TU118225 other downstream 324817 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 337658 32262776 ~ 32263531 (-) False AMCG00018000
TU117930 other downstream 1942696 30627988 ~ 30658493 (-) True G94543
TU118371 other upstream 42714 32648464 ~ 32652684 (-) False G94887
TU118375 other upstream 42714 32648464 ~ 32652684 (-) True G94887

Expression Profile