RNA id: AMCG00018023


Basic Information

Item Value
RNA id AMCG00018023
length 1656
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00018023
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32680587 ~ 32684608 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTTGTTGAAGCGGGCATGTCGTTTCCGTCCCCGGAGTGGGACACCGTGACTCCCGAGGCCAAAGACCTCATCAACAAGATGTTAACGATCAACCCTGCCAAGCGCATCACCGCGGCCGAGGCCCTGAAGCACCCCTGGATCTGCcAACGCTCCACCGTGGCGTCCATGATGCACAGGCAGGAGACCGTGGAGTGCCTGAAGAAGTTCAACGCTAGGAGGAAACTGAAGGGGGCGATCCTCACCACCATGCTGGCCACGAGAAACTTCTCAGGTACGTGTGCGTCTCCGTGTGCTGTAACCCGACCCGGCCCGGCTGGCGCGGAATCAGGGCTGCCCGGCGGGTTTTCAAGGCATTGTCCTTCAGACCGAAAGGGAAGAAGGGGTCGAGAGTTTCCCGCAGTGTTCTGTGTAGAGAGACCAGTGTATAAGGTGCATGTCCAGCACAAGGTGTGTGGGAAAGAGAAGCACAGGACTGTTTAGATCGTATTTATTCCCTGCACTTATTACTATttgagtgtgtttgtttaattgtgagGTTTACAAACCAGAGAACAGGCCGTCATCCTTCCTGCCCAGGTGTGCTGAATGCATGTGGTTAAAGCTCGGgctcagctgtgtgtgtctgagttaATGGAGAGTGACAAAGCGCAGGGTGCTAATCCCTGCATCGCGGTCCCTCCGGCCTTTTAACTCCCTTCCTAAACGAGCAACTCGATCCCCCGCCTCGTTACTGTTGAGAGCGGTCTGGATCTGGCTTCAGAGGATAATGCAGTCGCTGGGTTTATCGGGCTCCCGGGGTCTCGGACGTTTTCATTTCCCACAGTGATCAGACAGGCTATAACAAGACACAAATCAGACCCTCTCTGACAGCGAGTTTTAAACGCACTGGATCTGACCAGCACCTCTGCACTGCTTTGAGAGACGGCTCGACCCGAGATCTGAGCTCCTGAACTCTTAACAAGACAGGAAGAGCACGGATTGGGACAGAGGTTTTCCAGATGTGCTTAAAGCGGAAGCAACGCTCTTTAACTGAGCCCCATCGCTGAGCCACTCGTCCAGTCCCTGTGTTCTTATTGTCTTATTGAGGTTTAGGAAATGTAAACGGGGATAATAAACTATACCTGATCAGGGTTTCAGTGAATTGAACGCACACACACTAGAGCTGTATCTATGCAGCTCTGGGCGGTGTGTGCCACGCGCTGCGCAGGTAAGCGATTGCCGCCCAGCCCTCAGCGGCTCAGTGAACACAGCGCTAGTGTCGTACAGTACAACCCACCCATCCATTGTTGCCTGTTGTGTGACGAAAACAAGTTCTCCAtagtgcttttgtttcttttgtttttttttgctttattctgCACAGACAGCTCATCTGTGTGTAGAGAATGAAAAGACAGATGTGTCTCCACAGTAAAttgtctttatattttgtttcccttCTTCCTGTCCTTCCTTTGTTTGGACTGTGTTACCTGTGAGGTAAGGTCCTTTGAATACCCGGGGGCATGTTTTGCACCCCTAACCCCCGAAATCAATGCCTGAGACACTGAGAAGTCCTTGCTTGCTTGACCGATCCCTAACATACCCAGTAAATTAATATCCACATTCACCCAAATTGAAGCTTTGTTTCCTTAATCTGCCAGCTGCCCC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118408 lncRNA downstream 18946 32656030 ~ 32661641 (-) True AMCG00018020
TU118233 lncRNA downstream 334004 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 483981 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 851787 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 938928 31741224 ~ 31741659 (-) True G94655
TU118424 lncRNA upstream 105171 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 163658 32848266 ~ 32848466 (-) True G94936
AMCG00018020 mRNA downstream 15472 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018021 mRNA downstream 74837 32601189 ~ 32605750 (-) True AMCG00018021
AMCG00018016 mRNA downstream 201735 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018015 mRNA downstream 251022 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018008 mRNA downstream 292901 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018025 mRNA upstream 3773 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018024 mRNA upstream 10352 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018022 mRNA upstream 82637 32767245 ~ 32776080 (-) True AMCG00018022
AMCG00018029 mRNA upstream 111276 32795884 ~ 32819447 (-) True AMCG00018029
AMCG00018028 mRNA upstream 152023 32836631 ~ 32847899 (-) True AMCG00018028
TU118371 other downstream 27903 32648464 ~ 32652684 (-) False G94887
TU118375 other downstream 27903 32648464 ~ 32652684 (-) True G94887
TU118334 other downstream 74836 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 224177 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 385154 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile