RNA id: AMCG00018024


Basic Information

Item Value
RNA id AMCG00018024
length 1197
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00018024
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32694960 ~ 32713623 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATTCACGAATGATTCAGTGCGCTGCCCCGGCAAGAGAGGCTTCATTTCAGAATCTGACTGGGCTCCCGAGGAGAGGCGGGCCGACAGCAGTGCCACCACATCAGTACATCAGCCAGCCTCGGTGCTGGCTGCAGTCATCAGCACACAGCCCGGTGAACACGAACCCTGTGCCTCCCCCAGACCCCCAGGTGGCTCTGGGTTCTgtcgtCAGCAGGTTAATGAGTCTCTCTGCACTGAGATCGCACTCAGGGGCTCTGCCATGCCCTCCCCCGGGCCACGCCGgtgcctgcctgtctgtgggCTCCACGGGGAGGACCAGGCTGTAATTGTCCGCCTCCGGTCTCTGAGCGCCACAGCAAGAGAGGCTGCAGTTGGGAAAGTAGGCCAGACCTCGCGGCAGGCCGTACGGCACTGCCCGGCCCCTGAGGCAAGCAGGTCTCGACAAAACCCTGCGCACAGACGCATCCTCAGCGCTGTTCGCACAGTGAGGGAGGTGTATCATCAGAAGCTGGAAAGGGAAGCGAGAATCTGCCGCCTGCTGAAGCACCCCAACATCGTAGAGAGGATAGAGACCTATGGTATGAGCTTCTATAGCGTCCTGGACTGGCCTATAGCCTCCAGTGCAATAAAGGTGTGGGGAAGAGCCTCGTTCCGCAGCGCCGCATCCCTGAGCTGCCGTTCGTTTAGCTTCTCCTTCTACCTCTTTTcctccttcctcttctccttctccttcattTTTAACAAGTTCGACCCGCTGACAGCCAGCCAGCGCAGGAGAAATGACTCACGCCAGGCGGTGTGTCTCCGGGCGGTGAGACTCCACGACAGCATATCGGAAGAAGGATTTCACTACCTAGTCTTCGATTTAGTAACTGGAGGCGAATTGTTTGAAGACATTGTAGCCAGAGAATACTACAGTGAAGCTGATGCAAGTCATTGTATACAGCAGATTCTAGAAAGTGTAAATCATTGCCACCTAAATGGCATAGTGCACAGAGACCTGAAGCAGATCCTGGAGGCCGTGCTCCACTGCCATCAGATGGGTGTGGTCCACCGGGACCTCAAGGTCTGCCGTGTGTTTGGGCTGGATGTAGCAATCCTGTTCAGTCTGCCGGACCGGCGCCAGTCACCGGATGCCTTCATTGAGCCCCGGTGCTGCGGGCCGACCGTCCTTCTGCGCAGGCGGGTTTAA

Function

GO:

id name namespace
GO:0035295 tube development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118408 lncRNA downstream 33319 32656030 ~ 32661641 (-) True AMCG00018020
TU118233 lncRNA downstream 348377 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 498354 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 866160 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 953301 31741224 ~ 31741659 (-) True G94655
TU118424 lncRNA upstream 76156 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 134643 32848266 ~ 32848466 (-) True G94936
AMCG00018025 mRNA downstream 4089 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018023 mRNA downstream 10352 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018020 mRNA downstream 29845 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018021 mRNA downstream 89210 32601189 ~ 32605750 (-) True AMCG00018021
AMCG00018016 mRNA downstream 216108 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018022 mRNA upstream 53622 32767245 ~ 32776080 (-) True AMCG00018022
AMCG00018029 mRNA upstream 82261 32795884 ~ 32819447 (-) True AMCG00018029
AMCG00018028 mRNA upstream 123008 32836631 ~ 32847899 (-) True AMCG00018028
AMCG00018032 mRNA upstream 138181 32851804 ~ 32864532 (-) True AMCG00018032
AMCG00018031 mRNA upstream 153698 32867321 ~ 32889902 (-) True AMCG00018031
TU118371 other downstream 42276 32648464 ~ 32652684 (-) False G94887
TU118375 other downstream 42276 32648464 ~ 32652684 (-) True G94887
TU118334 other downstream 89209 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 238550 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 399527 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile