RNA id: AMCG00018028


Basic Information

Item Value
RNA id AMCG00018028
length 1736
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00018028
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32836631 ~ 32847899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGAATGAGGTGGTAACATGGCCGCCACCAATAACAAcgtgattttaatttgtatttctattttttaacgTTTCTTGTTggttaaaaggaaaatggacAAAATTTGTGTTTCAGACACGGATGGATTTGGAGTAGAAGTGATCTTAAACGAAGAGGACTCCGCAGCAGCGCCATGCTGTGTCCACGGCCCCGCTCTGCTGTTCGtgaagGTGTCGAAAGCCAGACTCTTGGCTCGTGAAGAGGAGAATAAAGCGAAGCAGCCGCCCTTCACACACGAGGAGTTCCGCTCCCGGTTCCTTCAGGTCGTCTCCCTCCCGCTGGCGCAGCGGCGGTTCTGCCAGACCtgccagctgctgctgctccctgCGGACTGGGCTGCCCACTCGGCCCACAGCATCCTGCTCGACGTTAGCGCCGCCCAGCTGCGCCGGCCCAGCCAGCTGCTGCGCCCGCTGGACAACAAGAAGACCAACGCGCAGTACCTGTTCACGGACCGCAGCGGCCACTTCCTGCTGGACCTGTTCGCAGCGCTGGGCTTCCAGAAGGTGCTGTGCCTCGGCACCCCACGCCTCCATGAGCTGATCAAGATCAGGAACTCGGAGGGCAGCGGCCGGGTCATGAAGAGTCTGCTCCTGGACATCGACTACAGGTATTCCCAGTTCTATGGTGAGGAGGAGTTTGGCCATTACAACATGTTCAACCATCACTTTTTCAACGGAAAGGCGGCGGAGAAGCGTCTCGAGGACTTCTTGCATGAGGAGGGGGGGGAGAAGGTGGTGATGGTGACGGATCCTCCCTTCGGTGGCTTGGTACGGCCGCTGGCGCACAGCTTCTCCAAGATCTGCTCCCAGTGGAGGAGCCTGCAGAGCCCCGAAACTCAGGGAGCGGAGCTGCCTATGGTCTGGATATTCCCCTACTTCTTTGAGCCTCGCATCCTGGAGTGTTTTGCCTCGTTTTCTATGCTGGATTATCAGGTGGATTATGACAACCACCCCCTTTACAAGCACGGAGGCAGGGGGCGCAAACAGTCCCCTGTGCGGCTCTTCACCAACCTGAGGCCCAGCAACGTTGTCCTGCCCCCGGAGGAGGGCTACAGGTTTTGTTCCCTCTGCCAGCGATACGTGTCCTCGGGAAACCAGCACTGCCCGCAGTGCGATGCCTGCACGTCCAAGGACGGCAGGGAGTGGAAACATTGCTTTCTGTGCAACAAGTGTGTGAAGCCAACCTGGCTGCACTGCTCGGGCTGCGGTCACTGCGCTCTGGAGGACCACCCCTGCGGCCGGCGGGGGTCCGGCTGCTTCTCCTGCGGCTCCACAGACCACAAGCGCAGGGCCTGTCCGGTATCAAGCGGCGCCGTACGACACCGACCGAGGACTCGGGCGGCCAGGGCAGGGGATGGGAGGAGGCGCAGCGGCGCTGTCCTGCACACGGTCCAGAAGCAGGAGCGCGCTCTGAGAAGACTGACCCAGAAGAGCAAGAAGATGATGAAAAAGAAGACGAAGAGCTCATAGTGCCTCATCGCTCCTCCCACACCAATCGAGCAGCCTGCCCGCTCTGTagacatacatgcatataacacatacatgtctgtgtctgtaccGGTCTGAGCTGCGGCGGCGCAGGAATCGTCCTCTGTGCCTGCGTGTGAAAGATAGACTGgtcatttatatacatttttaactgtaaacacttttaaacttgtatttttctGCAATAAAACCAAAAGTGTGAAGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118424 lncRNA downstream 45943 32789779 ~ 32790688 (-) True G94927
TU118408 lncRNA downstream 174990 32656030 ~ 32661641 (-) True AMCG00018020
TU118233 lncRNA downstream 490048 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 640025 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 1007831 31828459 ~ 31828800 (-) True G94665
TU118438 lncRNA upstream 367 32848266 ~ 32848466 (-) True G94936
AMCG00018029 mRNA downstream 17184 32795884 ~ 32819447 (-) True AMCG00018029
AMCG00018022 mRNA downstream 60551 32767245 ~ 32776080 (-) True AMCG00018022
AMCG00018024 mRNA downstream 123008 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018025 mRNA downstream 145760 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018023 mRNA downstream 152023 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018032 mRNA upstream 3905 32851804 ~ 32864532 (-) True AMCG00018032
AMCG00018031 mRNA upstream 19422 32867321 ~ 32889902 (-) True AMCG00018031
TU118371 other downstream 183947 32648464 ~ 32652684 (-) False G94887
TU118375 other downstream 183947 32648464 ~ 32652684 (-) True G94887
TU118334 other downstream 230880 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 380221 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 541198 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile