RNA id: AMCG00018031


Basic Information

Item Value
RNA id AMCG00018031
length 6741
RNA type mRNA
GC content 0.59
exon number 36
gene id AMCG00018031
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32867321 ~ 32889902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTGCTCCTCAGCTTTTCTGGATTTCTGCAAGTATGCCACGATGAAAACTCCCACAAAACGGAGCCCTCTGCAGCCGTACGGATCCCATAGCGGTGCCTTCTAATGCAGATACTCTGACGAAGTCCTTGTTGAAGAGAGGCCAGTGATCGAACCCTCCGCACAGCTCTGGGACAGCGCCCCCTGTGTGCAGTGATCTGAGGGAGGTACGCAGTGTTGAGACAGCTACCCCTGTGTGCAGAGATCTGAGGGGGGTACGCAGTGTTTGGACAGCACAGCTCCATGGGGACGCAGGGCCGGGTGTGcgcactgctgctgctgctcagtgtgGCTCACTGGGCACAGGCCTCCCTGGTCAGGGTCAACAGGGGTCTGCGGGTGAAGAAGGGTCAGATGGCCTTCCTGCAGGAGGACGATCTGCAGTTCAGCATCCCCAGGGAGAGAGACGCCTGCAAGGTGGAGGTGGTGCTCAACGAGCCAATCACACAGAGGGTGGGCAAGCTCTCCCCACAGGTGTTTGACTGCCACTTCCTGGCTGACGAGGTAAAGTACATCCATAATGGATGCCCCCTCCTGGACGAGGACCAGGTGCTGCTACGACTCTACAGGTTCACAGAGATGGAGACGGTGACAGAGGTGTTTGTGCTGCGTGTGGAGCTCACAGAGCCGGACTGCAGTGTCATCAAGCTGGGCCCCCGAGCCCTGGAGGTGCCGGAGTTCTACGGCCTGTCGGAGGCTCTGGATGGGAACACACTGTCCTTCCACTACGAGCGCAGGCCGGGCTTGGAGTGTACGGTGCGGATCAACACCCACGATGCGTACCTCCCTGCCCATGGACAGCTGGTCATAGGGGAGCCGGAGCGGCCTGAGCCCCGCGGAGACGTGCCACACAGCTTCGTCTCTCTGCGGCAGAGAATTATGAACAGGGCTGGGGCCAAGTGTAAAGACGAGGTCTGCCGGAAGGGCCTGAAGCTGGTCCAGATTACCAAGGTGTCCTGTGACGAATTCCTGCTGATGGGCCTCCGGTACCAGCACCTGGACCCTCCCTCTCCGGACATTGACTACATTTCTATCAGGCTGGACCTCACTGACACCAGGAGCAGGAATGTAATCCAGTCAGAGCGAACCTGGATCCCTGTCCGAATCCGAAATGCCATCCCCAACCAGCCACCGTCCGCTGCCTTCATGCCGTCTTTCCTGCTGGAGGTGGACCAGTTCATTCTGACGCCACTGAGCACAGGGGCGCTGGATGCCGAGGATGAGGAGACGCCACGCTCCCTTCTGGTGTTCAATGTCACCAGGCCACCAACACAGGGCTTTATCACACACCTGTCTGACCACACACGGCCCATCTCCTCCTTCACCTGGGTTGACCTGAACGACATGCTCATCGCCTACCAGCCACCCAACGCCAGCCACACTGAGCGCAGGAACTACGAGGTGGAGTTCGAGGTCCATGATTTCTTCATTGAGAAAAGCCCCCCAATCACTGTTCATATCTCAGTTAGGACTGCGGACACCAATGCACCCAGGGTGTCCTGGAACATGGGCCTTAATATCCTGGAAGGGCAGTCCCAGCCCATCACCTGGGACCAGCTGCAGATTGTGGACAATGACAACCTGGGAGCCGTGCGTCTCGTCACCGTGGATGGGCTGCAGCACGGCCGGCTCACCGTGCGAGGAGGGAAGGGTTTCCTGTTCAGCGTGAGCGACCTCAGGGCCGGTGTGGTGCGTTACCACCATGACGACAGCGACACCACCAAAGACTTCGTGGTGTTCCGGATATCGGACGGCCGTCACAGCACCCGGCACAAGTTCCCCATCAACGTCCTGCCGAAGGACGACAGTCCCCCCTTCCTGATCTGCAACATGGTGCTGGAGGCGCTGGAGGGGCAGGCAGCTCTGATCCGCGGCTCCACGCTGCAGGCTTCTGATCTGGACTCCAGCGACGACTACATCCTCTTCAACATCAGCCGCCCGCCAAGCGCCGGGGAAATCACCAAGACCCCCGGGCCTGGACTCACAGGTTACCCTGTCAGCCGCTTCCTCCAGAGGGACTTACTCAACGCAGTGATTTATTACCGTCACCTGGGGCAGGAGGTGTTCGAGGATTCCTTTGAGGTCACTCTCTCGGACAGCCACgacccccccaacctctccGAGCCGCAGGTCGTCGTGGTGCACATCACCCCTGTCCACGACCAGCTGCCCCGAGAAGCACCCGGAGGAACTCGGCAACTGTCTGTCAAGGAAACAGAGGTAGTTCATCTGACCACGAAGCACCTGCACTTCACTGACCCTGAGTCTCCTGAGCAGGATCTGACCTACACCATCACCACCCACCCCTTCAGCTCCGCTCACGGGAAGCAGGATGCAGGGAAGTTGTTCCTGGTCGACAGTGTTCCTAAATTCACCAAAGACCCCGGGGCCCCAGTGTTGCGCTCATTCACACAGCACGCTGTGAATCACATGAAGGTGGCCTACATGCCTCCCATCCAGGACATTGGCCCGCTGCCCCAGCATGTGCAGTTTGTGTTCTCTGTCACCAACCAGCAGGGAGGTGCTCTCAGTGGTATCTGCTTCAACATCACGGTGCTGCCCGTGGACAACCAGGCTCCGGAGGTGTTCCTGAATGCTATGGCTGTGCCAGAGGGTGGGGAGGCCTGGCTCACTGAGGGGTTCGTACGGGTCATCGATAGGGACTCGGCACTGGAGCAGCTCAGCTTGGCGCTGGACAAGGGGCCGCGGCATGGGCAACTGTGGCTGGACAAGCTGCCCCTCACACAAAGATCTCGGCTCTCACTGCAGGACCTGCACAGCAGAAAAGTTAGTTATCGTCACGATGGCTCTGAGACGCTGCAGGACGACATTGTCTTCATTGCGACGGATGGAGTCAATTCAGTGGACTTTGTTGTGCAGGTTAAGGTGATACCGGTCAATGATGAGGTCCCAGTCTTGAATCCAGGCCTCAGACCAATGCTGGAGTGCACAGAGGGACAGGGAGTGGTCATCACCACAGAGTACATCTACGCCACAGACGGCGACAGCAACGATGGGAGGCTCACCTACATGATCGCACGCCAGCCTAGCCAGGGGGTGGTACAGAAGAGAGGGAAGCCCGTGGATCATTTTTTCCAGGAAGACATTGTGGCTGGCATTGTCatgtacaaacacacagGAGGGGAGATCGGGCTGAACCCTCGCTATGACACCGTCACCTTTGTGATCTCGGACGAAGACCAGGATGCCACACAGAGCTGCTGCTATAAAGGATCTTCACCCCTCGCTCCCACAGCCCGGATTGCAGACTCACTGCCTGTGTACGATCTCAATATAACCGTGTTCCCCATGGACAACCAGCCTCCCACCATCATCATCGGAGAGATGTTTGTGGTTGATGAAGGAGGTTTAGCCTCCATCACTGTATCCGACCTGAGTGCTAGTGACCCCGACACCCCCCAGGAGGAGTTACGGTtcatcctgctctctcctccccAGTTCGGCTACATCGAGAACACCCTGCCCAGTCCCGGGTTCGAGAAAAGCAACACTGGGATCAGTATTGAGCCCATCACGGACCAGTTCCTGCTCTGTGTCACTGACGGCAAACACCACTCCCTCGAAACTCCATTTTACATCGTCATCAACCCCACCAATGACGAGGCCCCGGATCTTCTGGCAAGAAACATCACTGTCCAGGAGGGGCAGACGAAGGAGCTCGACCCCTCGGTCCTGGACGCGGTGGACCTTGACATTCCCAGGGAGACCCTGACCTTCACTGTTGTCCAGCCACCGCAACACGGGATCATCATGAATGGTGTCTATGGCACCGAGGTGTCACGCTACAAGCAGCTGATCCAGGCCCAGCGTAGCACCGCGCTCTCGGTGCTGCGCTTCACCCTGGAGGACCTGACTAATGGAATGACTCTGATGTACATGCATGACGACTCCGAGAGCATGGAGGACCACTTCACCATCCAGCTGAGCGACGGGAAACACAACGTGCGCAGACAAGTGGCAGTGCGGGTCGTTCCTGTCAACGATGAGAGACCTCGGATTGTAAGAAACAACGGTGTGGAAGTGGAGATGGGGGAAACCAGGGTCATCTCAGGGGCTGTGCTCTCTGCAGAAGACCAGGACACCCCAGCGGACCAACTATCCTATGTGTTTGAAACTCTTCCCAAACTTGGATTACTGCAAAAGAAGGAAGGACTGGAATGGCTGCCTCTCTTGCCAGGGATGAACTGCACTCAGGAGGACGTTGACATGAACCTGCTGCGCTATCGGCACACGGGCTCACTGGGCTCCCAGAGCCAGGACTCCTTCACCTTCCACCTGCAGGACGGGAGCCACCGCTCGCCGGCCCTGCACTTCTTCATCACTGTGAAGGACATGCAAAAAGGAGACATTGCCGTTTTCACTCAGCCCCTGAAGATCTGGACAGGAGAGCGGGCGATAGTGACCACTGACGTGCTGCTGGCCGTGGATGGCACAGACAAGCCTGAGGAGCTGCTCTATGTGCTAACCACCCACCCTGCCAGCGGCCATGTGGAGTACCTCACCCACCCCGGGGTCCCCATCACCTCCTTCAGTCAGATGGACGTGGCTGCCAACCTGGTGTGCTACGTTCATGACAACAGGGCCACTGCAGTCAGAGAGCAGCTAGGATTCCTCATCAGCAACGGTCTGTCGTCCCGCAACGGCTCCCTGGAGGTGTGGGTGGAAGCTGCTGACCGGAGTCCACCGTCTCTGTCCAGGAACACCGGGCTGCGGGTCCCAGAGGGCGGGCAGGTCACGATGCCACCTCACGCCCTCAGCCTCTCCGACCCCGACACACCGCCTGCACGCCTCCTCTTCCTGATGGCTCAACCACCACAGTTCGGCCAGCTGTACCTGCGGGGGGTGCCACTGAGCCAGGGCAACTTCACCCAGCAGGACCTTGACAGTGGAGACCTGATCTACAGGCACGGTGGCGGGCCCGCTCAGATCGACCGCTTCGGAGTCGTGGGCTCCGACGGCACCAACCAGGGATTCCTGGTGGAGGGGCAGCTGCAGACCCAGCCCGTCTTCATCACCATCCAGGTAGAAGCTCTGCACTCGGCCGCCCCCCATGTGGTTCAGCTGCACGGCCTGTGGAGGGCGGAGCTCCTGGAGGACGGCCGCTATGGGATCCACATCTCCTCCAGAGACCTGCGGGCAGAGGGCCCGGGAGATGAGCATATCACCTTCCACATCCTGCAGGGGCCTCAATTCGGCTACCTGGAGAACACAACGACAGGTCAATTCATCCACCACAGCTTCACCCAGAGGGACCTGAATAGGAGACAGATCCTCTATGTCATCGACACGGCTCTGGAGGCCCTATCTGACAGACTGCAGTTCCAGGTCTCTGACCCCCTGGGGAGCACTGCTCTTCCACAGATGCTGGAGTTCCAGTGGTCTCGTACAGAGTTCTCCCAGGCTGAGTACCGAGTCTGTGAGGACGTCGGGACGCTGTCTGTCTCCATTGTGAGGAAGGGCAATATGGCAGAGTCTTCATTCGTGGCAGTTAAGGTCAATGAAATCTCAGCATCTGTTGGGAAGGATTTCACTCTGAGTCCCTCGAACCTCATCCAGTTTGACCCTGGTGTGTCGGAGCGCAGCTGGCGGGTACAGCTGGCCCGGGACCggctggaggagggggaggaggtgtTCGAGGCCGTGCTGTCCTCCCCGGTCAGCACTGTGCTGGGCAGCGCCACGAAGGTGGCCGTGAGGATCTCTGACGCCAGCACAGGCCAGTGCAGCAGTGCCCAGGATGCCACTCAGGTGGGGCTGAAGACAAGGGTGACCCCACTGGTCCCAGGCTCCCCCCCGCAGCATGGCTCTATCCAGCTGGAGATGCTGCCCTTCTCTGTGGTGGAGGGGTGGACCCGAGGAGAATCTGCCCAGCGGCCACCTCACCCCCAGGCTCGGCTGACGCCCAGAGGAAATGGGAAAATTGTTCGCCCGTCCTCTGTTCATCGAAATGGGACGGATTTATTATTCAGGTATCATGGGATCGTGTCTCTGCGTGTGGAGGACGACTCGGCGGCTCCTGCCAGCGCTGGGAAGAGTGCCAGGGTACTGGtgaccagcagagggcagcagagGCTTCCCCCGGGCCCTCCGGGGAACAGTGCGGTCCTGAGCACGGATATCAGCGCTGCCCACTCCACTCCGCAGACGAGTCCTGGCAGCTCCTTCCCCAGAGCCTGTGTCCCTGAGCTCACTGGACTCCTGCAGTTTGACCAGGATTCCCACCAGCTGCTGCGCTGTGATGGCGTGTCCTGGCAGTCCTGGACCCCCACTGAAGAGGACATGGGCCCTCAGAAGTGTCCCCATGGCTGGACGCTTCATGGCAGCTGCTGCTACCTGGTCAGCAGGGACCACAGGGCCACCTGGAGCTCCGCCGCCCGCGCCTGCAGGGAGAATCACAGAGGCAGCCTGGTCAGCGTCCTCTCCAAACCCGACATGGACTGGCTGTGGGACTTCAGCGGGAGGAAGCCCTTCTGGATCGGGCTGAATGACAGGGAGAACACGGGGAGTTGGGAGTGGGTGGGCGGGGAGCCGGTGACCTTCACCAACTGGAAGAAGGGGCCCCCCAGGGCCAAGAGGAGGGCGGGGAAGAACTGTGTGCTGGTGAGGAGGAGAGGGAAGTGGCAGGTGAACGACTGCAGGAAGGGCAGAGGGCATCAGTACGTCTGCTACATCAAGACATAA

Function

GO: NA

KEGG:

id description
K23380 FREM1_2; FRAS1-related extracelluar matrix protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118438 lncRNA downstream 18855 32848266 ~ 32848466 (-) True G94936
TU118424 lncRNA downstream 76633 32789779 ~ 32790688 (-) True G94927
TU118408 lncRNA downstream 205680 32656030 ~ 32661641 (-) True AMCG00018020
TU118233 lncRNA downstream 520738 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 670715 32192183 ~ 32196606 (-) True G94747
AMCG00018032 mRNA downstream 2789 32851804 ~ 32864532 (-) True AMCG00018032
AMCG00018028 mRNA downstream 19422 32836631 ~ 32847899 (-) True AMCG00018028
AMCG00018029 mRNA downstream 47874 32795884 ~ 32819447 (-) True AMCG00018029
AMCG00018022 mRNA downstream 91241 32767245 ~ 32776080 (-) True AMCG00018022
AMCG00018024 mRNA downstream 153698 32694960 ~ 32713623 (-) True AMCG00018024
TU118371 other downstream 214637 32648464 ~ 32652684 (-) False G94887
TU118375 other downstream 214637 32648464 ~ 32652684 (-) True G94887
TU118334 other downstream 261570 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 410911 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 571888 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile