RNA id: AMCG00018032


Basic Information

Item Value
RNA id AMCG00018032
length 2483
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00018032
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32851804 ~ 32864532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAAAATGTCTTGAACAGAATTGTGGTTCAAATGGCAGCAGAGGGACCTGGCTTTGAGCTGGAGTGGATTCAGCGTCTGTCATTGAAGAAGAGAATACGGCTCTCAGTGAAACCAACATTTAGCTCTCTGTACAGCAGTGGAACTTCAGGGGCCGTCGTCCATCAGGTTCACAGGTCTGTTTAAATACCACTGTGGCGCGTCGGGGCCGTGATGCATGGAGGAGGCCGCACCCAGGCCGACACACACTGCTGCAGGTTCTCCCAGGTAGGCTGTGACGCGCAGCTCCGGCACGCAGGCGCAGTGGGAGCAGGAAGCAGCGGCGCTGAAGTGCGGCGCTGAGAGCCGGAGAAACTCCCTCGGTCCAAGCAGCCTCGGCCGAGAGACGCCGGCGCCCATGACGGCGCGGACGGAGCGCTGACCGGGAATCAGTCACAGCGAAGCGGCACCATGGCGGACTGCGAGCCCAGCGACACTCCCGAGCCGCAGGGTCCGTCGGCGCGGTTCGATAGGAGCGCCCTGGTGGTGAAGGTGAGCCCGGGCGGAGCGGTGCGCCTGCCGGAGCCCAGCGACAGCGGGCTGGTCGAGCTGGAGGCGGAGGGGTCTGGGGAAGaagaggagctgctgctgctgccgggGCCGGCGGGCTACTCGTCCCCCCGGGGCGGCAGAGAGAAGCGGTCCCGGTGGAATCGGCTGAGCTCGTCCTCCGACCGGGAGAACTCGCTGTCGTGCTCAGGCAGCATGGGGGGCACTGGGGAGCTGAACTCCTTCCCTGAAGACCCAGAGTTTGCTGAGATCGTGCAGCGGGCGGAGCAGGCCATCGAGAACGGTGTCTTTCCCGAGAGGATTTCACAGGGATCCAGCGGCAGCTACTTCGTTAAGGATCCTAAAGGGaaaataatcGGAGTGTTCAAACCAAAGTCCGAGGAGCCCTACGGACACCTGAACCCCAAGTGGACTAAGTATTTCCACAAGGTGTGCTGTCCCTGCTGCTTCGGCCGGGGCTGCCTGGTCCCCAACCAGGGCTACCTGTCCGAGGCCGCTGCATCTCTCGTCGACCAAAAACTGGGTCTGGACGTCGTGCCCAAAACCAAGGTGGTGTTTCTGGTCAGTGAAACGTTCCACTACACTGCAATCGACCGTGCCAAGTCCAGGGGAAAGAAGTACGCTTTAGAGAAGGTCCCCCAGGTCGGCAGGAGGTTTCACCGCGTTGGTTTGCCTCCGAAGGTTGGCTCGTTCCAGCTGTTCGTGGAGGGCTACCACGAGGCCGACTTCTGGCTCCGGAAGTTCGAAACGGACCCCCTGCCGGAGAACATCCGGAAGCAGCTCCAGTCGCAGTTCGAGAGGCTGGTTGTCCTGGATTATGTCATTAGGAATACTGGTACCCTTGTCATTAAGACTGCTCTCAAGCTTCTGCGTACTGTGGAGACTGAGCACACGACCCTGATTGTGCTGTACCTGTGTGACGGCACCGGACTGCAGCTCAGCATTACTGTCGTCTCTAAAccttccctttttcttttcccaacCCTTCTAGATCGAGGCAACGACAACTGGTTAATCATGTACGAGAAGCCCGGGAGCGCCACTGTGTCAGAGAAGGACAGCGACTGGACCCTGAAGACGGATTCGGGCATCAAGATAGCGGCCATAGACAACGGGCTGGCCTTCCCCTTCAAACACCCCGATGAGTGGAGGGCCTACCCCTTCCACTGGGCGTGGCTCCCGCAGGCCAAGGTGCCCTTCTCCCTGGAGACGCGCGAGCTCGTCCTGTCCCGCATCTCCGACATGAACTTCGTGCAGGACCTCTGTGAAGACCTCTACGAGATGTTCAAGAGGGACAAGGGCTTTGACAAAGCCACGTTTGAgaagcagatgtctgtgatGAGAGGACAGATCCTGAACCTGACCCAGGCCCTGAAGGACGGGAAGAGCCCGATCCAGCTGGTGCAGATGCCCCGGGTGGTGGTGGAGCGCAGCCGCAGCGGCAGCCAGGGCCGGGTGGTGCAGCTGGGCAACGCCTTCACGCAGACCTTCCACTGCAAGAGgcccttcttctcctcctggTAGCCCCGACCCCCAGCGCACCGGGACCCTCGGCCTCGCGGTGCAGACGGCTGCCAACTGCCAAATCAAAACCGAACCACGAAACTAAACTTGAATCTTTGCaaaagtgtttttgaatgtaACTGAGTTTACAGATCGTCCCGCCAGCGATTCCAGTGCAGGGGACAGAGTATTTTTTCATACGATGAAtgtattgtggttttaaacGTATTAAATACTCTACGCAGCACAGTACTACGGGGGCTTCTGCTGCCGGCTCTGAAGGACAGCGGAGCATCTGTTCACACCTGGTTCTTAAAACGCATCttgggtgtttttgtttttttcttttccagaacATATGATTGTAAAGCTTTAGATAAATTgttagtttaaaatatgtatttaaatgaaataaatttaCAAGTTGTTTAA

Function

GO:

id name namespace
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K13711 PI4K2; phosphatidylinositol 4-kinase type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118438 lncRNA downstream 3338 32848266 ~ 32848466 (-) True G94936
TU118424 lncRNA downstream 61116 32789779 ~ 32790688 (-) True G94927
TU118408 lncRNA downstream 190163 32656030 ~ 32661641 (-) True AMCG00018020
TU118233 lncRNA downstream 505221 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 655198 32192183 ~ 32196606 (-) True G94747
AMCG00018028 mRNA downstream 3905 32836631 ~ 32847899 (-) True AMCG00018028
AMCG00018029 mRNA downstream 32357 32795884 ~ 32819447 (-) True AMCG00018029
AMCG00018022 mRNA downstream 75724 32767245 ~ 32776080 (-) True AMCG00018022
AMCG00018024 mRNA downstream 138181 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018025 mRNA downstream 160933 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018031 mRNA upstream 2789 32867321 ~ 32889902 (-) True AMCG00018031
TU118371 other downstream 199120 32648464 ~ 32652684 (-) False G94887
TU118375 other downstream 199120 32648464 ~ 32652684 (-) True G94887
TU118334 other downstream 246053 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 395394 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 556371 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile