RNA id: TU112024


Basic Information

Item Value
RNA id TU112024
length 2669
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G89819
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 177246 ~ 179935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtgtaattttaattgtagaTACAACAGTCAAGTGGGCAGTGCTTGAGACATAAAAATCTAAACCAATATCACAAAAGCACCAATGTTTTTTCATTCCAAACCAGAAGGCCTGTTTGGGAACTGTACACATGATTTTAGAATCTCCACCTCCATTACAAGTATAGTGTGATGCAATATTACcccagaataacaaaaatatcaGATTATTAGGCATAGCACAATGAAGGAGAAAACttgctttatgtatttttttattattcatttttagaaaAGCCTGCTTTTTACAGGGTTTATGCAGCAGATTCAGGGCTTGACTTTAAATGCTATATGCaggcataaataaatagaaagtcaatgtttttttttactctttccAAATGCAAGCTTAAATTGATTGATTACTAGTCAGCTCAATacccatttttatttccatcctAAACATGGAATGCTGcacattgatttatatatagtaaaacCTCTCTCATCATCTCTGTTGTGTCACCAAATCAACCCAGTAGTTATTAATCTACATTGCTGAATGGTTCAGAATACAACTGTTTCCAAGGCACACAtaagtataaaacaaatgaccAACTGAACCAATTTGAATCCCATCAGAATGTAAATTAACCATGCTATTCCAAGTGATCTTCCATGATATTCAATGAGACTATGAGAATCATAGCACATAATTATAGTCCATTATGTCTGTCCACAGCTGTCCCTGTCCCCATATCACAGGCTAATTTAACAGCATTGCAGAGATTATAGGAAgtgattgtttttgtattagcATGCTTAGAAATTGTCATTCAGTCTCAGttggttctctctctctaatgtgTCTGAGAatgtaatataacatttatatttcttaattgGCTAAACACCCATTGGAAAAGAGATAAGTAGAAAGTCTGTTGATCGTATTTCACATACCTAAAGTTTCCcgtaaaacatataaaatactgtTGCTTTCCAATAATGTAAATTTCACacagaaatgaagaaataaaagtaCTTGAACTTAAAATACATGTGCTGGTACAgtgtcatttaaatacatgttaaaaattAAGAGTACCTAATGACCCATTTTGCTCTTTAGATTGCGAAAACAAGGTATTATGATGGAAACAGAATATACGAATGCCTTgtggaaaattgaaaaaaaaaaaaaaaaaaaactgaaataattaccAGCAGGCAAATGTCTGATGGGTGACAGGATtccaaatattaataataaataaaactaaacgtAATATATCAACATACACTGGTTTATAGTGAGTAATGCAGCTAAGATGAGTGAGCACAGCTAAACAGTGGTCTGACAAGTCGTAtaagtgaattaaaaacattgtgtgcTTCTGAAATTTGTTTAATACAGTATGAGGATAACTTATACTATAGGATGTGTCAGCTATGGTTCAAATGGCTAGTTATTTTTCTCAGATTTATATGGGTTTAAGTCTGCATTAACCATTGGATTTACACTCAATGCAATGTTCCTTAGTTTGCAAAGGTGCAGATTCAAGATTCAAGATTCAAGGTGCAGGTTCAAGTAGCATTGTGTAATGTTACACCTCCTGGAGTTATATTATCTTAAAGTCACATAATTCAATTTTATCATACTGAGTCTTAAAGTTTAAGTGGCAACTGTATTAGGGGCAGTACTCAGTTCACATGCAAGACAGTACAATTCAATGTCTGGACATCTTTTTGGAACTGGAAACGAAAACATTATGTACATAGTCAGTGTTACATTCACAGTGtttccacagaagaactgttaGATCAGTTATGAATTTTAGACTGTCTTAATAGAAAGGTCCTCTTAAAAGTATGGTCACTGAGTTTTTCCTTTGATTAATGCACTGAGGACAGCCATATTACATGTCAACCATTAATGCAGCTATGCAAATTAATCTCtggtgcttaaaaaaaacatatttccatttCAGCATGGATGACAAGTCCAGGTTTCaaagaagcaaaaaacaaacaagcaaactaaAAACTCTGTTAAGGAACACAGGAAGCCAGTATTTGTAACGTTTTTGATATATGCACATTACTAAAAGGTATTTCTTAGAAACCCAAGATGTTAAGGACACCCACTCACTGTAAACCTGGATATGGCTTTATGTTATTCAAATATGAGGTTATGTAATGTAAACACAGGAGACAAATGGGATTTCACCAAACCATTTTAAACCTAGTACAGTAACAAATCGAGCatgaacaaaaaactaaaaaaataacagcaacagcaacaactcTTTGGCACATGATGCAttcaacaaaaaactaaaatacaaatgcttgTAGTACACATGACTGGTGCACAGACCCATTTGAGACAGTGAATTTTGATGGCACAGCTATCCTCTTTACTGGGAGTCTCAGTTTGCTTTCTTCATTGCACAACCGCGTCATCTTATATGGAGAGAAGAGAGATTGCTGGCCTTCAAGTAGGGTCCCCCAGACATATTTTCAGCTCATACAGGTTCCCCTCTCAGCAGTGAACAGCTGGCAGCCCCTAGTGGCACTAGATGTGCTGTTTTATAGTGCAAATTGTCTGTTAGCAGTCCCAACAGATTTTCTCCAAGGGTCATTTTCGAAAAGGGGGCAAGGCTATGTTGGGTTTCACCCCTGGTACAGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112023 lncRNA upstream 743 175050 ~ 176503 (+) True G89818
TU111984 lncRNA upstream 134181 42802 ~ 43065 (+) True G89784
TU112039 lncRNA downstream 47316 227251 ~ 228724 (+) True G89832
TU112047 lncRNA downstream 162680 342615 ~ 402466 (+) True G89837
TU112121 lncRNA downstream 565819 745754 ~ 745999 (+) True G89896
TU112123 lncRNA downstream 697976 877911 ~ 878653 (+) True G89898
TU112126 lncRNA downstream 735068 915003 ~ 915213 (+) True G89901
AMCG00017385 mRNA upstream 5499 109675 ~ 171747 (+) True AMCG00017385
AMCG00017386 mRNA upstream 78849 57720 ~ 98397 (+) False AMCG00017386
AMCG00017388 mRNA downstream 29462 209397 ~ 210954 (+) False AMCG00017388
AMCG00017389 mRNA downstream 241574 421509 ~ 440294 (+) True AMCG00017389
AMCG00017390 mRNA downstream 675343 855278 ~ 887994 (+) True AMCG00017390
AMCG00017392 mRNA downstream 1085507 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017399 mRNA downstream 1554497 1734432 ~ 1736022 (+) True AMCG00017399
TU111991 other upstream 78863 48007 ~ 98383 (+) False AMCG00017386
TU112033 other downstream 27651 207586 ~ 211936 (+) True AMCG00017388
TU112484 other downstream 2507485 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 2507485 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 4482724 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 6549803 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile