RNA id: TU112039


Basic Information

Item Value
RNA id TU112039
length 276
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G89832
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 227251 ~ 228724 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagtgctcctaatctcagctcattacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccgtcgccaagcagcttggtgagaaggtgacaacagttggtgcgatgaCAACAGACAatcatagtcaccaagaaaacaattggtaacacactatgccgtgaaggactgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112024 lncRNA upstream 47316 177246 ~ 179935 (+) True G89819
TU112023 lncRNA upstream 50748 175050 ~ 176503 (+) True G89818
TU111984 lncRNA upstream 184186 42802 ~ 43065 (+) True G89784
TU112047 lncRNA downstream 113891 342615 ~ 402466 (+) True G89837
TU112121 lncRNA downstream 517030 745754 ~ 745999 (+) True G89896
TU112123 lncRNA downstream 649187 877911 ~ 878653 (+) True G89898
TU112126 lncRNA downstream 686279 915003 ~ 915213 (+) True G89901
TU112134 lncRNA downstream 741919 970643 ~ 971264 (+) True G89908
AMCG00017388 mRNA upstream 16297 209397 ~ 210954 (+) False AMCG00017388
AMCG00017385 mRNA upstream 55504 109675 ~ 171747 (+) True AMCG00017385
AMCG00017386 mRNA upstream 128854 57720 ~ 98397 (+) False AMCG00017386
AMCG00017389 mRNA downstream 192785 421509 ~ 440294 (+) True AMCG00017389
AMCG00017390 mRNA downstream 626554 855278 ~ 887994 (+) True AMCG00017390
AMCG00017392 mRNA downstream 1036718 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017399 mRNA downstream 1505708 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017398 mRNA downstream 1529662 1758386 ~ 1768848 (+) True AMCG00017398
TU112033 other upstream 15315 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 128868 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 2458696 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 2458696 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 4433935 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 6501014 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 6501014 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile