RNA id: TU112090


Basic Information

Item Value
RNA id TU112090
length 1209
lncRNA type sense_over
GC content 0.30
exon number 2
gene id G89870
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 385671 ~ 447085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gactggatagtatcatTGCACACCAAACAAGCAGGATGGGTCgaaaggcctcctctcgtttgtaaactttaatgttctttcttatgttaaaataatttgccaGTATTGATAAATTATTTCTCACCATGGTGAGGCGATATACAGTATACCAGCACAGCACTACACATAAGCAACACTGCAATAATCaacttttatataaaaagttaaaaaatgttatgtatttaacCTTTTGAATTATAGAAAAATTAGCAcatggaagagaaaaaacacatgtTTTAATTCATCACTTGGTTCTAGTAGTTAGTTTTCCCAATCATAGAAGCAATATTTATGAGAAACTACTGAAACTCAGTGGTTTCTATTGCACAAACCATCCAATCATTTAATAGTCATATAcatgtgtaaaatgttattaatgataggattacatttaaaaaataaactgggtTGACAGTAAAAGCAGAATCTTCTTTTGTATAACCTTTACACAAGGTGACAGAGGCAGAGCAGTGAGAACATGAAGacatttgctttgaaaatgtagtCGCACATCTTGTTTACATCATtacaaataaaccaattatgggcttttaatattattgcaTAAGCTGGAACACTCATCATACAACCTTTTTATACAGTAGAGAAGCAAGATACACACTTCAAAATATTTACCTACCTTTCAGAGTTAATTTGTTGTCAAGGTTTTCTTCACTAAACAATACGAAATTGTCCTTGATGTAGGTAAACTAATGTGAATACAAAACTGCTGCATTTAGTGTTTATGCATACCAAGACGTAATGTCTTGCCTATTGtatagaaaaattaaaaaaaaaaaaaaaaaatgccgcAATACTGTGTGTACAACTACTGTAGTCAGACTAAAAATACCATATATTTTTGCGGTTAAATCAAACAGatgtgtatttgcaaatacatttttattttttttattttttatgtagtcCAGAGTAATTCCTTGAAACCAACTGGATAATCTAGTTAATCCAAGCAGTATATACAATACCAGTTTCAgtgacccagattagcactagtttacccaatgttattttggGTATGAAAGAGTaatgctaatcaaggtctgtgaaaccagtggtttctaaaaaataaaataaaaagggttttaaaatcaatactagtgggtttttttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112076 lncRNA downstream 165713 207586 ~ 219958 (-) False AMCG00017384
TU112074 lncRNA downstream 167121 207586 ~ 218550 (-) False AMCG00017384
TU112007 lncRNA downstream 213921 166138 ~ 171750 (-) True G89803
TU112108 lncRNA upstream 16123 463208 ~ 463423 (-) True G89883
TU112110 lncRNA upstream 55082 502167 ~ 528797 (-) True G89885
TU112117 lncRNA upstream 185831 632916 ~ 633178 (-) True G89892
TU112118 lncRNA upstream 244485 691570 ~ 691851 (-) True G89893
TU112120 lncRNA upstream 274216 721301 ~ 721711 (-) True G89895
AMCG00017384 mRNA downstream 108847 160054 ~ 276824 (-) True AMCG00017384
AMCG00017391 mRNA upstream 488796 935881 ~ 936676 (-) True AMCG00017391
AMCG00017393 mRNA upstream 828147 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017394 mRNA upstream 991443 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 1108443 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017396 mRNA upstream 1152503 1599588 ~ 1600290 (-) True AMCG00017396
TU112073 other downstream 33885 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 279786 105685 ~ 105885 (-) True G89804
TU112472 other upstream 2161604 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 4095690 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 4711299 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 4711299 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 4775388 5222473 ~ 5223047 (-) True G90502

Expression Profile