RNA id: TU112108


Basic Information

Item Value
RNA id TU112108
length 216
lncRNA type intronic
GC content 0.42
exon number 1
gene id G89883
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 463208 ~ 463423 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttccgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcacgttcttgattgttttcctccttgctccctttcccgtagccctagtctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtctcttactgtacttgtgtaaattgtaattggaatttgtaaaatgt

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112090 lncRNA downstream 16123 385671 ~ 447085 (-) True G89870
TU112076 lncRNA downstream 243250 207586 ~ 219958 (-) False AMCG00017384
TU112074 lncRNA downstream 244658 207586 ~ 218550 (-) False AMCG00017384
TU112007 lncRNA downstream 291458 166138 ~ 171750 (-) True G89803
TU112110 lncRNA upstream 38744 502167 ~ 528797 (-) True G89885
TU112117 lncRNA upstream 169493 632916 ~ 633178 (-) True G89892
TU112118 lncRNA upstream 228147 691570 ~ 691851 (-) True G89893
TU112120 lncRNA upstream 257878 721301 ~ 721711 (-) True G89895
TU112125 lncRNA upstream 447973 911396 ~ 911648 (-) True G89900
AMCG00017384 mRNA downstream 186384 160054 ~ 276824 (-) True AMCG00017384
AMCG00017391 mRNA upstream 472458 935881 ~ 936676 (-) True AMCG00017391
AMCG00017393 mRNA upstream 811809 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017394 mRNA upstream 975105 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 1092105 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017396 mRNA upstream 1136165 1599588 ~ 1600290 (-) True AMCG00017396
TU112073 other downstream 111422 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 357323 105685 ~ 105885 (-) True G89804
TU112472 other upstream 2145266 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 4079352 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 4694961 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 4694961 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 4759050 5222473 ~ 5223047 (-) True G90502

Expression Profile