RNA id: TU112117


Basic Information

Item Value
RNA id TU112117
length 263
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G89892
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 632916 ~ 633178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACTAGCACTAATAAGGTACCTGATAGTCGCCGACCTGTAGGCTGGCATGCTTTCCTACATGCGATGGCCTGTCTGAACATGCCCCAATCAACAGTTCCTAACCAGGAAACGCGACAAAAAATCCGTCTGTGTAAAGAGGGGGAGACTGATGTGACTCCGACATCTCATTACTCTGACCGTGCTGAGCGACTATCCTCAGGATCTAGCCACCATTGGGAAGCTTATTaatctcatgtttttatttgtccccCCTGTAAAT

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112110 lncRNA downstream 104119 502167 ~ 528797 (-) True G89885
TU112108 lncRNA downstream 169493 463208 ~ 463423 (-) True G89883
TU112090 lncRNA downstream 185831 385671 ~ 447085 (-) True G89870
TU112076 lncRNA downstream 412958 207586 ~ 219958 (-) False AMCG00017384
TU112074 lncRNA downstream 414366 207586 ~ 218550 (-) False AMCG00017384
TU112118 lncRNA upstream 58392 691570 ~ 691851 (-) True G89893
TU112120 lncRNA upstream 88123 721301 ~ 721711 (-) True G89895
TU112125 lncRNA upstream 278218 911396 ~ 911648 (-) True G89900
TU112135 lncRNA upstream 335365 968543 ~ 971428 (-) True G89909
TU112138 lncRNA upstream 406094 1039272 ~ 1039471 (-) True G89912
AMCG00017387 mRNA downstream 162486 360455 ~ 470430 (-) True AMCG00017387
AMCG00017384 mRNA downstream 356092 160054 ~ 276824 (-) True AMCG00017384
AMCG00017391 mRNA upstream 302703 935881 ~ 936676 (-) True AMCG00017391
AMCG00017393 mRNA upstream 642054 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017394 mRNA upstream 805350 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 922350 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017396 mRNA upstream 966410 1599588 ~ 1600290 (-) True AMCG00017396
TU112073 other downstream 281130 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 527031 105685 ~ 105885 (-) True G89804
TU112472 other upstream 1975511 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 3909597 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 4525206 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 4525206 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 4589295 5222473 ~ 5223047 (-) True G90502

Expression Profile